Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0955 ATGATGTTCCTCCCTTTCACCGCCTCCTTCTTACTACTCTTCCTTCTTCAACACTTCTCTATACACCTCAAAGCCTATAACCCAGAAATTTTCACCATCAATTGCGGCACCACCGCCAAGTCCTCCGACGGTCAAAGAATGTGGACCGGCGACGCAGATACCAAGTACTTATCTCCCCAAGACACCATTTCAGAGAAAGCAACAACACAGTCTCCTTCCGCCAATCAAATCCCGTTCTCCACTGCACGCTTGTCAAGTTCCCAATTCAATTACACCTTCCCAGTCTCTCCGGGCCCCAAATTCGTTCGCCTCTTCTTCTACCCTGCTGACTACTCTTCCTTTCTCCGCACCCACGCATCTTTCTCCGTTCAATCCAACCAATTCACTCTCCTCGACGCTTTTAACGCCTCTCTTAACGCTGACGCTCAAGCCACCGACACTATCTTCAGAGAATACGTCGTCAACGTCAAAGACGGTGAGAGTCTTATCCTTACTTTCACACCCTCCCATCCAAACTCCTACGCTTTCATCAATGGAATCGAGGTGCTTTCCATGCCAACCGATTTATATTACACTCCACCAGATGACCCAGGATTCACTCTCGTGGGACATGATACGCTATTCAGCATCGGAAGTAGTACTCCCATGGAAACAGTGTATCGTATTAAATCCGGAGGCCAGGAAATCTCACCACAAAACGACACCGGTTTGTTCAGGTATTGGGCTCCCGAAGAAAGTTACTTCATCAAACATAATCCAAAGAATAATGATCTACCAGCTGACATAGATGGGAAAATGAACATAACCGTGAATCCCGATTACTTGGCACCAAAGGAACTGTTCAGAACAGCGCGTAACATGGGCACAAACGCCACTTTGAACAGAATGAGCAACCTCACTTGGGAGTTTCCCGTTGATTGTGGCTTCATTTACGTTGTCAGACTCCACTTCTGCGAGCTTGATCCTAATATCAATAACATCGGTGACAGGCGATTCTCAATTTACATAGCGAGTCAGTTGGCTGATGGGCGTGCAGATGTAATGAAATGGAGTCAGAAACGAAAAGGTCTAGCTGTGCATAGAAATTATGTCGTTTTAATTCCCAACAATGGTACTCAGAAAAAGTATAATCTCTCGCTTCAAATGCACCCTTACGAAAGCAGCGTGGATACGAGATACAGCGACGCCTTCCTCAACGGTCTCGAGATCTTCAAAACCAATGTAAACAACCTTGCTGGACCCGAGCCGGACCCCCTTCAGACTCCGCACAACATCATCCTCGGAAAGACAAGCAGCGGAAGTGGAAAAACAACGATTGTTGTCGTCACAGGGGTGGGAATCGGTGTCGTATTTATCTCTCTTGTGATTTTGTTCGTTGTTGTCTCGAGACACATGAGAACCACTGAAACGAATACTTGGGTATACAAATCCAAGTCGTTCACAGCCACACAGAAAGCTTCCCTACCGTCCGATCTCTGCCGCCACTTCTCCCTTGGGGAGATCGAAGCCGCCACCAACAACTTCGACGACGTCTTCATCGTCGGCGTCGGAGGATTCGGTCACGTGTACAAGGGATACATCGACGGCGGCTTCACCCCGGTAGCAATCAAGCGCCTGAAACCGGGTTCGCAGCAGGGTGCGCACGAATTCTTGAACGAGATCGAGATGTTATCGCAGCTCCGCCATCTTCATCTGGTCTCCCTAATCGGATACTGCAACGAGATGAACGAGATGATACTGGTCTACGACTTCATGGCGCGCGGCACCCTACGCGACCATCTCTACAACACGGACAACCCCGCTATCTTGTGGAAGCAGCGCTTGAAGATCTGTATCGGCGCGGCGCGAGGGCTGCACTATCTCCACACAGGCGGGAAGCACACGATCATCCACCGCGACGTGAAAACAACGAACATCTTGTTAGATGATAAGTGGGTGGCGAAGGTTTCGGACTTCGGGCTTTCAAGAATCGGGCCAACAGGCACGGAGAAGTCCCACGTGAGTACCCATGTGAAGGGAAGCTTTGGCTACATAGATCCTGAGTACTACAAACGATTTCGTTTAACGGAAAAGTCTGATGTTTACTCTTTCGGGGTTGTGCTGTTTGAGGTACTGTGTGGTCGTCCAGCTTTGATTCACAGTGCAGAGACGCAGCAGGTATCGCTTTCTAACTGGGTGAGACATTCTGACCAAAATGGGACCTTAGCGGAGATTGTGGACCCTACTTTGAAGAATAAGATTGCACCGGAGTGCCTGAAAATGTTTTGTCAAATTGGAATAAGCTGTTTGTTGGAAGATGGGACGAAGAGGCCGTGCATGAAGGACGTGGTTGCGATGTTAGAGTTTACGCTGCAGCTACAAGAAAGTGCAGAGCAACACGCAACTGAAAAGGGAGAGGAAATTAGTGAGGATGGCTTTTCTACTACTGACTTGTATGTGACTACTACGACTTCCACCAGTGAGGACAATAGCTATAGTAATAATACGGTGTCGTCTTGGACTCCTTTCTCCGAAATTATGGATCCAAAGCCGCGTTGA 2538 0.485 MMFLPFTASFLLLFLLQHFSIHLKAYNPEIFTINCGTTAKSSDGQRMWTGDADTKYLSPQDTISEKATTQSPSANQIPFSTARLSSSQFNYTFPVSPGPKFVRLFFYPADYSSFLRTHASFSVQSNQFTLLDAFNASLNADAQATDTIFREYVVNVKDGESLILTFTPSHPNSYAFINGIEVLSMPTDLYYTPPDDPGFTLVGHDTLFSIGSSTPMETVYRIKSGGQEISPQNDTGLFRYWAPEESYFIKHNPKNNDLPADIDGKMNITVNPDYLAPKELFRTARNMGTNATLNRMSNLTWEFPVDCGFIYVVRLHFCELDPNINNIGDRRFSIYIASQLADGRADVMKWSQKRKGLAVHRNYVVLIPNNGTQKKYNLSLQMHPYESSVDTRYSDAFLNGLEIFKTNVNNLAGPEPDPLQTPHNIILGKTSSGSGKTTIVVVTGVGIGVVFISLVILFVVVSRHMRTTETNTWVYKSKSFTATQKASLPSDLCRHFSLGEIEAATNNFDDVFIVGVGGFGHVYKGYIDGGFTPVAIKRLKPGSQQGAHEFLNEIEMLSQLRHLHLVSLIGYCNEMNEMILVYDFMARGTLRDHLYNTDNPAILWKQRLKICIGAARGLHYLHTGGKHTIIHRDVKTTNILLDDKWVAKVSDFGLSRIGPTGTEKSHVSTHVKGSFGYIDPEYYKRFRLTEKSDVYSFGVVLFEVLCGRPALIHSAETQQVSLSNWVRHSDQNGTLAEIVDPTLKNKIAPECLKMFCQIGISCLLEDGTKRPCMKDVVAMLEFTLQLQESAEQHATEKGEEISEDGFSTTDLYVTTTTSTSEDNSYSNNTVSSWTPFSEIMDPKPR* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0955 845 ProSitePatterns Protein kinases ATP-binding region signature. 514 537 IPR017441 GO:0005524
Vra1g0955 845 PANTHER RECEPTOR-LIKE PROTEIN KINASE FERONIA 20 805 - -
Vra1g0955 845 SMART serkin_6 508 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0955 845 PANTHER OS07G0166700 PROTEIN 20 805 IPR045272 GO:0004714|GO:0006468
Vra1g0955 845 SUPERFAMILY Protein kinase-like (PK-like) 484 783 IPR011009 -
Vra1g0955 845 Pfam Protein tyrosine and serine/threonine kinase 514 780 IPR001245 GO:0004672|GO:0006468
Vra1g0955 845 Gene3D - 29 186 - -
Vra1g0955 845 Gene3D - 215 409 - -
Vra1g0955 845 MobiDBLite consensus disorder prediction 807 836 - -
Vra1g0955 845 CDD STKc_IRAK 514 781 - -
Vra1g0955 845 MobiDBLite consensus disorder prediction 791 845 - -
Vra1g0955 845 ProSiteProfiles Protein kinase domain profile. 508 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0955 845 Gene3D Transferase(Phosphotransferase) domain 1 585 808 - -
Vra1g0955 845 ProSitePatterns Serine/Threonine protein kinases active-site signature. 629 641 IPR008271 GO:0004672|GO:0006468
Vra1g0955 845 Gene3D Phosphorylase Kinase; domain 1 467 584 - -
Vra1g0955 845 Pfam Malectin-like domain 33 405 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0955 Vra-Chr1 11362051 11365006 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0955 21 845 Receptor kinase-like Gene Family AT3G51550 47.684 0.0 722
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vra1g0955 Malectin_like 5.6e-38 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0955 - - var:108344516 1476.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0955 1 11362051 11365006 Vra1g0955 1 11362051 11365006 ECH