Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0954 ATGATAAGTCTTCGCCACTTCACTCACTTCTATTCTCACCCTACAATGGCTATCACCACCTCCATAACACTCTTTTTCCTCCTTCTACACTTCTCCACACGCCTCCAAGCCTACACCTCAAAGGAAGTTTTCACCATCAATTGCGGCACCACCGGGAACTCCTCCGATGGTCAAAGAACCTGGACCGGTGACACAGACACAGAGTACTTATCTTCCCAAGATACTACCGTTTCAGACAAGGCGTCAACACAGTCTCCTTCAACCAATCAAGTCCCCTTCTCCACTGCACGCTTGTCCCGTTCCCAATTCAATTACTCCTTCCCTGTCTCCCCAGGCACCAAATTCCTTCGCCTCTTCTTCTACCCTGCTGACTACCCTTCCTTTCCCCGTGCCAACGCATCCTTCTCCGTTCAATCCAACCAATTTTCTCTCCTCAACGATTTCAACGCCTCTCTTAACGCCGACGCTCAAGCCACGGTCACTATTTTCAAAGAATACGTGGTCAACATCAACGACGGTGAGAGGCTTATCCTCACCTTCACTCCCTCGCATCCAAACTCTTACGCTTTCATCAATGGAATCGAGGTACTTTCCATGCCAACCGATTTATATTACACAACAAATGATACAGGCTTCACGACCATCGGAACTACCACCCTGTACAGTCTTGGAACCAGCTTTGCTCTTCAGACTGAGTATAGAATCAAAGCCGGAGGACAAGAAATCTCGCCATATAACGACAGCGGTTTGTTCAGGGATTGGACGGCCGAAGAACCTTACTTTATCAAACACAATCCAAAGAATGATGATCTATCAGCTGACGTGGATGGGAAAATGGACATAACCGTGAATCCCGATTACTTGGCACCAAAGGAACTGTTCAGAACAGCGCGTAACATGGGCACAAACGCCACTCTGAACAAAATGAGCAACCTCACTTGGGAGTTCCCCGTTGATTATGGCTTCACTTACGTTCTCAGGCTCCACTTTTGCGAGCTTGATCCCAATATTAATGACATCGGTGACAGAAAATTTCATATTTACATAGCGAGTCAGGTGGCTGAACAAGGTTCAGATGTAATGAAATGGAGTCAGCAACAAAAGGGCCTAGCTGTGCATAGAAACTACGCCGTTTTTATTCCTGAGAATGGTGCTCAGAAAAAGGTTAATCTCTCGCTTCAAATGCACCCTTATGAAAGCGCTGTGGATACGAAATACAGTGACGCCTTCCTGAACGGTCTCGAGATCTTCAAAATCAGCCAAGCTGGCTCAAACAACCTAGCCGGACCCAACCCTGACGCGATTCCGACTCCACATAACAGGATTTCCGGCCAAAACGTAAAAACTCGCAGCGGAAGTGGAACGACAATAATTGATGTCGTCGTAGGAGTGGGAATCGGTGTCGTTTTCATCTCTCTTGTCATTTTGTTAGTAGTTGTCTTGCAACGCAAGAGAACCACTAAAACAAATTTCAAGGATTACAAATCCAAGTCGTTCAGGGCCACACAGAAAGCATCCCTGCCGTCAAATATCTGCCGCAACTTCTCCCTCGTAGAGATTGAGGCCGCTACCAGGAACTTCGACGAAGTCCTCATCATCGGCGCAGGAGGATTCGGTCACGTGTACAAGGGTTACATCGACGGCGGTTCCACCCCCGTTGCCATCAAGCGCCTGAAACAGGAATCACAGCAGGGTGCGCATGAGTTCTTGAACGAGATTGAGATGCTCTCACAGCTTCGCCACCTTCATCTCGTGTCCCTCATCGGATACTGTAACGACAACAACGAGATGATCCTGGTCTACGACTTCATGGCGCGTGGCACCCTACGCGATCATCTCTACAAGACGGATAACCCCCCTCTCTCATGGAAGCAGCGCCTGCATATCTGTATCGGCGCCGCGCATGGGCTGCATTATCTCCACACAGGCAGGAAGCACACGATCATCCACCGCGACGTAAAAACTACGAACATCTTGTTAGATGATAAGTGGGTGGCAAAGGTTTCGGACTTTGGACTTTCCAGAATTGGACCAACAGACACGGAGAAGTCCCACGTGAGTACCCATGTGAAGGGAAGCTTTGGCTATATAGATCCTGAGTATTACAAACGATTTCGTTTAACGGAAAAGTCTGATGTGTACTCTTTCGGAGTTGTGCTATTTGAGATACTGTGTGGTCGTCCAGCACTGGTTCACAGTGCAGAGACGCAACAGGTGTCTCTTTCTAATTGGGTGAGACATTGTCACCGGAATGGAACCATAACAGAGATTGTGGATCTCGTGTTGAAGAAGGAGATTGCACCTGAGTGCCTGAAGAAGTTTTGTGAGATTGGGATAAGTTGTTTGTTGGAAGATGGGACGAAGAGGCCGTGCATGAAGGATGTGGTTGCGATGCTTGAGTTTACGCTCCGACTACAAGAAAGTGCAGAGCAACGCGAAATTGAAAAAGGAGAGGAAATTAGTGAAGATAGCTTTTCTACTACTGACTTGGATGTGACTGCTACGACTTCCACTAGTGAAGACAACAGTTACAGGAATAATACGGTGTTGTCTTGGACTCCTTTCTCAGAAATTATGGATCCACAACCGCGTTGA 2595 0.4767 MISLRHFTHFYSHPTMAITTSITLFFLLLHFSTRLQAYTSKEVFTINCGTTGNSSDGQRTWTGDTDTEYLSSQDTTVSDKASTQSPSTNQVPFSTARLSRSQFNYSFPVSPGTKFLRLFFYPADYPSFPRANASFSVQSNQFSLLNDFNASLNADAQATVTIFKEYVVNINDGERLILTFTPSHPNSYAFINGIEVLSMPTDLYYTTNDTGFTTIGTTTLYSLGTSFALQTEYRIKAGGQEISPYNDSGLFRDWTAEEPYFIKHNPKNDDLSADVDGKMDITVNPDYLAPKELFRTARNMGTNATLNKMSNLTWEFPVDYGFTYVLRLHFCELDPNINDIGDRKFHIYIASQVAEQGSDVMKWSQQQKGLAVHRNYAVFIPENGAQKKVNLSLQMHPYESAVDTKYSDAFLNGLEIFKISQAGSNNLAGPNPDAIPTPHNRISGQNVKTRSGSGTTIIDVVVGVGIGVVFISLVILLVVVLQRKRTTKTNFKDYKSKSFRATQKASLPSNICRNFSLVEIEAATRNFDEVLIIGAGGFGHVYKGYIDGGSTPVAIKRLKQESQQGAHEFLNEIEMLSQLRHLHLVSLIGYCNDNNEMILVYDFMARGTLRDHLYKTDNPPLSWKQRLHICIGAAHGLHYLHTGRKHTIIHRDVKTTNILLDDKWVAKVSDFGLSRIGPTDTEKSHVSTHVKGSFGYIDPEYYKRFRLTEKSDVYSFGVVLFEILCGRPALVHSAETQQVSLSNWVRHCHRNGTITEIVDLVLKKEIAPECLKKFCEIGISCLLEDGTKRPCMKDVVAMLEFTLRLQESAEQREIEKGEEISEDSFSTTDLDVTATTSTSEDNSYRNNTVLSWTPFSEIMDPQPR* 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0954 864 Gene3D Phosphorylase Kinase; domain 1 511 603 - -
Vra1g0954 864 PANTHER OS07G0166700 PROTEIN 27 821 IPR045272 GO:0004714|GO:0006468
Vra1g0954 864 PANTHER RECEPTOR-LIKE PROTEIN KINASE FERONIA 27 821 - -
Vra1g0954 864 ProSitePatterns Serine/Threonine protein kinases active-site signature. 648 660 IPR008271 GO:0004672|GO:0006468
Vra1g0954 864 Gene3D - 228 421 - -
Vra1g0954 864 Gene3D - 39 200 - -
Vra1g0954 864 CDD STKc_IRAK 533 800 - -
Vra1g0954 864 Gene3D Transferase(Phosphotransferase) domain 1 604 827 - -
Vra1g0954 864 PIRSF TyrPK_CSF1-R 604 727 - -
Vra1g0954 864 PIRSF TyrPK_CSF1-R 528 618 - -
Vra1g0954 864 PIRSF TyrPK_CSF1-R 32 97 - -
Vra1g0954 864 PIRSF TyrPK_CSF1-R 765 860 - -
Vra1g0954 864 Pfam Protein tyrosine and serine/threonine kinase 533 799 IPR001245 GO:0004672|GO:0006468
Vra1g0954 864 MobiDBLite consensus disorder prediction 812 846 - -
Vra1g0954 864 ProSitePatterns Protein kinases ATP-binding region signature. 533 556 IPR017441 GO:0005524
Vra1g0954 864 MobiDBLite consensus disorder prediction 72 91 - -
Vra1g0954 864 ProSiteProfiles Protein kinase domain profile. 527 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0954 864 MobiDBLite consensus disorder prediction 826 846 - -
Vra1g0954 864 SUPERFAMILY Protein kinase-like (PK-like) 504 802 IPR011009 -
Vra1g0954 864 SMART serkin_6 527 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0954 864 Pfam Malectin-like domain 46 419 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0954 Vra-Chr1 11325380 11354179 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0954 38 864 Receptor kinase-like Gene Family AT3G51550 45.833 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vra1g0954 Malectin_like 4.4e-38 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0954 - - var:108344516 1322.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0954 1 11325380 11354179 Vra1g0954 1 11325380 11354179 ECH