Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0953 ATGATAAGTCTTCGCCACTTCACTCACTTCTATTCTCACCCTACAATGGCTATCACCACCTCCTTAACACTCTTTTTCCTCCTTCTACACTTCTCCACACGCCTCCAAGCCTACACCTCAAAGCAAGTTTTCACCATCAATTGCGGCACCACTGGAAAGTCCTCCGACGGTCAAAGAACGTGGACCGGCGACGCAGATACAAAGTACTTATCTTCCCAAGACACCACCGTTTCAGACAAGGCGATAACACAGTCTCCTTCAACCAATCAAGTCCCCTTCTCCACTGCACGCTTGTCCCGTTCCCAATTCAATTACTCCTTCCCTGTCTCCCCAGGCACCAAATTCCTTCGCCTCTTCTTCTACCCTGCTGACTACCCTTCCTTTCCCCGCACCCACGCATCCTTCTCCGTTCAATCCAACCAATTTATTCTCCTCAACGATTTCAACGCCTCTCTCAACGCCGATGCTCAAGCCACGGACACTATCTTCAGGGAATACGTGGTCAACGTCAACGACGGTGAGAGGCTTATCCTCACCTTCACTCCCTCGCATCCAAACTCTTACGCTTTCATCAACGGAATCGAGGTACTTTCCATGCCAACCGATTTATATTACACACCAGCAAATGACACAGGCTTCACGTTAATCGGAAGTAGCACCCTGTACAGTCTTGGAACCAGCTTTGCTCTTCAGACTGAGTATAGAATCAAAGCCGGAGGACAAGAAATCTCGCCATATAACGACAGCGGTTTGTTCAGGGATTGGGCTGCCGAAGAACCTTACTTTATCAAACACAATCCAAAGAATGATGATCTACCAGCTAACACGGATGGGAAAATGAACATAACCGTGAATCCCGATTACGTGGCACCAAAGGAACTGTTCAGAACAGCGCGTAGCATGGGCACAAACGCCACTCTGAATAAAATGAGCAACCTCACCTGGGAGTTCCCCGTTGATTATGGCTTCACTTACGTTCTCAGGCTCCACTTCTGCGAGCTTGATCCCAATATTAATAAAATTGCTGACAGAAAATTTCATATTTACATAGCGAGTCAGGTGGCTGATGATCGTGCAGATGTAATGAAATGGAGTCAGCAACAAAAGGGTCTAGCTTTGCATAGAAACTACGCCGTTTTTATTCCTGAAAATGGTACTCAGAAAAAGGTGTACAAGGGCTATATCGACGAGGGCTCCGTTCCCGTAGCCATCAAGCGCCTTAAACCGGATTCGCAGCAAGGGGTTCGCGAGTTCCTGAACGAAATTAAGATGCTCTCNCAACTTCGCCACCNCAATCTCGTGACCCTCATNGGNTACTGCAACGATAATAAGGAAATGATNTTGGTNTACGATTTCATGACANGTGGCAACCTCCGTGACCATCTATACAACACGNACAACCCAGCTATCTCGTGGAAGCAGCGGTTGCAGATCTGCATCGGCGCGGCGCGTGGACTTGATTATCTTCACACAGGCGCGNAGCACACGATCATCCACCGGGACGTGAAAAGCACGAACATCCTGTTGGATGATAATGTTACCCCGCAAACCATGAAGTTCCTTACTGTCACCACCTCCTTCACATTACTCTTCTTCCTTCTACACTTCTTCACACACCTCCAAGCCTATATCCCATCGGAAGTTTTCACTATCAGTTGCGGTTCCACCGGAATGTCCTCCGACGGTCAAAGAACGTGGGCTGGCGACGCAGACCCAATGTTCTTTACTTTCCAAGACGGCTCTGTTTCAGAGAAGGCGACAACACAGTCTTCTTCCACCAATAAAATACCCTTCTCCACCGCACGCTTGTCCCGTTCCCCATTCAACTACTCCTTCCAACTCTCCGCAGGCACCAAATTCCTTCGCCTCTTCTTCTACCCTGCCGATTACCCTTCCTTTCCCCGCACCCACGCATCCTTCACCGTTCAATCCAACCAATTCACTCTTCTTGAAGCTTTCAACGCCTCTCTTAACGCCGACGCTCAAGCCACCGACACTATCTTCAAAGAATACGTGGTCAATGTCAACGACGATGAGAGGCTTATCCTCACCTTCACTCCCTCGCTTCCAAACTCCTACGCTTTCATCAATGGAATCGAGATGCTTTCCATGCCAACCGATTTATATTACACACTAGAAAATGAGACAGGCTTCACGATGATCGGAACTAGCGCGCTGTACAGCGTTGGAACCAGCTTTGCTCTTCAGACTGAATATAGAATCAAAGCCGGAGGACCAGAAATCCCACCACAAAACGACACCGGTTTGTTCAGGAATTGGGCTGCCGATGAAAGCTATTTTATCAAAGACAACCCAAAGAATAATGATCTACCAGCTGATGTGAATAGGAAAATTAACATAACCGTGAATCCCGATTACGTGGCACCAAAAGAACTGTTCAGAACAAGGCGTAGCTCTGACAGAAACGCCACTATTAACAGGATAAGAATCCTCACTTGGGAGTTCCCCGTTGACCGTGGCTTCATGTACGTGATCAGACTTCACTTCTGCGAGCTTGATCTCAATATTAATAACATCGGTGACAGGCGATTCTCCATTTACATAGCTAGTGACTTGGCTGATGACCGTGCAGATGTAATGATTTGGAGTCAGAGACAAAAAGGGCTAGCTGTCCATGAAAATTATGCCGTTTTGATTCCCAAGAATGGTGATCAGAAAAAGTTTAATCTCTCGCTTCAAATGCATTCTTACGGAGGATACAGTGACCCCTTCCTCAACGGTCTAGAGATCTTCAAAATCAGTGAAGCCGGTTCGAACAACCTAGCCGGACCCAACCCGGACCTGGTTCAGACCCCACAGAACAATGCTCCCAGCCAAAATGGAAAGACCAGCAGTGGAAGCGCAACGAAAATTGGCATCACGGCGGGGGTAGTTTGCGTTGTCGTTTTCTTTGTCCTGTTGTTCACCACTTTCAAGTGGAGTGCACTGTTCACAACGACCAAGTCAACCAACAGCCACAATTTTTCTCTTCCTTCTGATCAATGCCGTCGGTTTTCCCTTGTCGAAATCAAAGCTGCCACCAAAAACTTCGATAACTCCTACGTCGTCGGCGACGGTGGATTTGGACACGTGTACAAGGGCTACACAGACGGCTCAGTCCCAGTTGCTATCAAGCGCCTTAGACAGGGTTCCCAGCAGGGGGCTAGCGAGTTCGTTAACGAGATCCAGATGCTCTCACAACTCCGCCACCGCAATCTCGTCTCACTTATCGGTTACTGCTGTGATAACAACGAGATGATCCTTGTTTACGAGTTCATGGGATGTGGAAACCTCCGCGACCATCTCTACGGCACCGATAACCCCCCTCTTTCGTGGAAGCAGCGGTTGAAGATTTGCATTGGCGTTGCGCGCGGGCTACGCTATCTTCACAGTGGCGCGAAGCAAATGATCATCCACCGTGACGTGAAAACGACCAACGTCTTGTTGGATGAAAGGTGGGTGGCGAAGGTTTCGGATTTCGGACTATCCAAAATTGGGCCGAATGAGATATCGAAGGCCCATGTGAGCACCGCCGTGAAAGGCAGCTTTGGGTATTTAGATCCGGAATATTACATTCGACGGCGGCTGACGGAGAAGTCCGACGTGTATTCTTTTGGGGTGGTGTTGTTTGAGGTACTCTGTGCCCGTTCACCTCTGATCCCTACTGAAGAAATCGAACAGGTGTCACTAGCTAATTGGGCCAAATATTGTTGCCAAAATGGGACAGTGACAGAGATGATGGACCCCATATTGAAGGGGAACATCGCTCCTGATTGTTTGGCCAAGTTTTGTGAGATTGGGGTGAGTTGTTTATCACAAGAAGGGATGCTGAGGCCGTCCATGAACGATGTCGTTTTGATGTTAGAGTCTGCGCTGAAATTGCAAGAGAGTGCCGACCAAAGGGCAACGCCGGAAGAAATTGATCATGTGCTTGATCTTGGAGAGCATCACAATAGTTGCAAGGACAATGATAATTTGATGTTGGAGCTGTTTTCTGAGATTGTCGACCTAGAGCCACGTTGA 4023 0.4817 MISLRHFTHFYSHPTMAITTSLTLFFLLLHFSTRLQAYTSKQVFTINCGTTGKSSDGQRTWTGDADTKYLSSQDTTVSDKAITQSPSTNQVPFSTARLSRSQFNYSFPVSPGTKFLRLFFYPADYPSFPRTHASFSVQSNQFILLNDFNASLNADAQATDTIFREYVVNVNDGERLILTFTPSHPNSYAFINGIEVLSMPTDLYYTPANDTGFTLIGSSTLYSLGTSFALQTEYRIKAGGQEISPYNDSGLFRDWAAEEPYFIKHNPKNDDLPANTDGKMNITVNPDYVAPKELFRTARSMGTNATLNKMSNLTWEFPVDYGFTYVLRLHFCELDPNINKIADRKFHIYIASQVADDRADVMKWSQQQKGLALHRNYAVFIPENGTQKKVYKGYIDEGSVPVAIKRLKPDSQQGVREFLNEIKMLSQLRHXNLVTLXGYCNDNKEMXLVYDFMTXGNLRDHLYNTXNPAISWKQRLQICIGAARGLDYLHTGAXHTIIHRDVKSTNILLDDNVTPQTMKFLTVTTSFTLLFFLLHFFTHLQAYIPSEVFTISCGSTGMSSDGQRTWAGDADPMFFTFQDGSVSEKATTQSSSTNKIPFSTARLSRSPFNYSFQLSAGTKFLRLFFYPADYPSFPRTHASFTVQSNQFTLLEAFNASLNADAQATDTIFKEYVVNVNDDERLILTFTPSLPNSYAFINGIEMLSMPTDLYYTLENETGFTMIGTSALYSVGTSFALQTEYRIKAGGPEIPPQNDTGLFRNWAADESYFIKDNPKNNDLPADVNRKINITVNPDYVAPKELFRTRRSSDRNATINRIRILTWEFPVDRGFMYVIRLHFCELDLNINNIGDRRFSIYIASDLADDRADVMIWSQRQKGLAVHENYAVLIPKNGDQKKFNLSLQMHSYGGYSDPFLNGLEIFKISEAGSNNLAGPNPDLVQTPQNNAPSQNGKTSSGSATKIGITAGVVCVVVFFVLLFTTFKWSALFTTTKSTNSHNFSLPSDQCRRFSLVEIKAATKNFDNSYVVGDGGFGHVYKGYTDGSVPVAIKRLRQGSQQGASEFVNEIQMLSQLRHRNLVSLIGYCCDNNEMILVYEFMGCGNLRDHLYGTDNPPLSWKQRLKICIGVARGLRYLHSGAKQMIIHRDVKTTNVLLDERWVAKVSDFGLSKIGPNEISKAHVSTAVKGSFGYLDPEYYIRRRLTEKSDVYSFGVVLFEVLCARSPLIPTEEIEQVSLANWAKYCCQNGTVTEMMDPILKGNIAPDCLAKFCEIGVSCLSQEGMLRPSMNDVVLMLESALKLQESADQRATPEEIDHVLDLGEHHNSCKDNDNLMLELFSEIVDLEPR* 1341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0953 1340 SUPERFAMILY Protein kinase-like (PK-like) 1001 1293 IPR011009 -
Vra1g0953 1340 Pfam Malectin-like domain 551 920 IPR024788 -
Vra1g0953 1340 Pfam Malectin-like domain 46 382 IPR024788 -
Vra1g0953 1340 PANTHER OS07G0166700 PROTEIN 27 389 IPR045272 GO:0004714|GO:0006468
Vra1g0953 1340 PANTHER OS07G0166700 PROTEIN 532 1301 IPR045272 GO:0004714|GO:0006468
Vra1g0953 1340 PANTHER OS07G0166700 PROTEIN 378 512 IPR045272 GO:0004714|GO:0006468
Vra1g0953 1340 ProSiteProfiles Protein kinase domain profile. 376 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0953 1340 Gene3D - 734 921 - -
Vra1g0953 1340 Gene3D - 229 392 - -
Vra1g0953 1340 Gene3D - 546 705 - -
Vra1g0953 1340 Gene3D - 38 200 - -
Vra1g0953 1340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1137 1149 IPR008271 GO:0004672|GO:0006468
Vra1g0953 1340 Gene3D Phosphorylase Kinase; domain 1 393 454 - -
Vra1g0953 1340 SUPERFAMILY Protein kinase-like (PK-like) 384 515 IPR011009 -
Vra1g0953 1340 Pfam Protein tyrosine and serine/threonine kinase 1022 1286 IPR001245 GO:0004672|GO:0006468
Vra1g0953 1340 Pfam Protein tyrosine and serine/threonine kinase 385 512 IPR001245 GO:0004672|GO:0006468
Vra1g0953 1340 ProSitePatterns Protein kinases ATP-binding region signature. 1023 1045 IPR017441 GO:0005524
Vra1g0953 1340 PANTHER RECEPTOR-LIKE PROTEIN KINASE FERONIA 27 389 - -
Vra1g0953 1340 PANTHER RECEPTOR-LIKE PROTEIN KINASE FERONIA 378 512 - -
Vra1g0953 1340 PANTHER RECEPTOR-LIKE PROTEIN KINASE FERONIA 532 1301 - -
Vra1g0953 1340 Gene3D Transferase(Phosphotransferase) domain 1 455 529 - -
Vra1g0953 1340 Gene3D Transferase(Phosphotransferase) domain 1 1093 1314 - -
Vra1g0953 1340 MobiDBLite consensus disorder prediction 929 952 - -
Vra1g0953 1340 CDD STKc_IRAK 1023 1289 - -
Vra1g0953 1340 Gene3D Phosphorylase Kinase; domain 1 979 1092 - -
Vra1g0953 1340 ProSiteProfiles Protein kinase domain profile. 1017 1292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0953 1340 SMART serkin_6 1017 1292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0953 1340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 497 509 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0953 Vra-Chr1 11309527 11318897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0953 389 529 Receptor kinase-like Gene Family AT3G51550 62.411 5.56e-49 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vra1g0953 Malectin_like 3.2e-32 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0953 - - vra:106770147 2653.24