Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0948 ATGTTCGGATTCTACCATCTTTCCTCTCAGCTCTCCCCTTCTTTCGATTCTTCATCCCCTCCGTCCGTCGCATTCTCCGACCAGGAGCTTCTGCTGGCAGTCAGGCATCCCAAGAAGAGGGCGGGCAGGAAGAAGTTCCGGGAGACGCGCCATCCTGTGTACCGCGGAGTCAGGAGGAGGAACTCCGACAAATGGGTGTGTGAGGTGAGGGAGCCAAACAAAAAGAGTAGGATTTGGCTGGGGACTTTCCCCACCCCGGAGATGGCGGCGCGGGCTCACGATGTGGCGGCGATGGCCCTCAGGGGCCGGTATGCCTGCCTCAACTTCGCCGACTCGAGGTGGCGGTTACCAGCCCCTGCTAGTGCCAGCGCCAAGGATATACAAAAGGCAGCAGCAGAAGCTGCTGAAGCTTTCAGACCAGACCAAAGTTCAGAAAACAGTAACACTACACAAGAGTGCTTGGAGGAGGTGACAAAAACAAGGATGGAACAAGGCGTGTTTTACATGGAGGAAGATCAGGAAGAGCAAGTGGTGGATATACCTGAGCAGCTGAGGAACATGGTGCTCATGTCCCCATCACATTGCTTAGGGTATGAGTATGAAGATGCTGACTTAGAGGCTCATCAAGATACTGAGGTGTCACTGTGGAGTTTCTCAATCTGA 663 0.5415 MFGFYHLSSQLSPSFDSSSPPSVAFSDQELLLAVRHPKKRAGRKKFRETRHPVYRGVRRRNSDKWVCEVREPNKKSRIWLGTFPTPEMAARAHDVAAMALRGRYACLNFADSRWRLPAPASASAKDIQKAAAEAAEAFRPDQSSENSNTTQECLEEVTKTRMEQGVFYMEEDQEEQVVDIPEQLRNMVLMSPSHCLGYEYEDADLEAHQDTEVSLWSFSI* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0948 220 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
Vra1g0948 220 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 5 220 - -
Vra1g0948 220 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Vra1g0948 220 PIRSF PTI6 125 220 IPR017392 GO:0003700
Vra1g0948 220 PIRSF PTI6 26 158 IPR017392 GO:0003700
Vra1g0948 220 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Vra1g0948 220 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Vra1g0948 220 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Vra1g0948 220 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677
Vra1g0948 220 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Vra1g0948 220 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 220 IPR045277 GO:0003700
Vra1g0948 220 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0948 Vra-Chr1 11150318 11151406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0948 4 218 AP2-EREBP Transcription Factor Family AT5G51990 53.509 7.39e-67 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra1g0948 AP2 8.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0948 - - gmx:547622 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0948 1 11150318 11151406 Vra8g2277 8 41052167 41053589 PCT