Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0946 ATGGCTTCTGCAACACTCTCTCTGCATTGCCCTCTTCTTCTTCATTCTCCTCTTTCTACCAAAATTACCAAACCACCCCTCTCACTGCGACCCCTTCTTCTCCCTCGCCCTCTCCACTCGCGCTTTCTCCTCCCTCCGCCACGCGCCTACGTTACCGCCCCCGCATCCGACCCAAATTTCGGAGACCCGGATCCGAAGTTAATCGGTTTGGTTCCGGAGAAGGCAAAGCCGCAAAACGTGATCACGTGGAGTCTGCTCTGCACGCTTCTCATGAACCACAAACTGCGCCTGACTCTCGTGTTCGCAACGCTCTTCGCCTGCTCCACCTGTACCCTATCCATGCCCCTCTTTTCCGGACGGTTTTTTGAAGTTCTAATTGGAGCTAGACCTGAACCGTTATGGAAGCTGCTTACTAAAATTGGAGTTCTGTATGCCTTGGAGCCACTTTTAACTATTATTTTTGTTATAAACATGAACATAGTGTGGGAGAAAATTATGTCGACACTAAGAGCTCAGATCTTCGGAAGAATATTGATTCAAAAGATTGAGTTTTTTGACAAATACAAGGTTGGTGAACTCACAGGTTTGTTAACATCTGATTTGGATTCTCTTAAAAATATTGTCAGTGAGAATGTCTCAAGGGATCGCGGATTCAGGGCATTATCTGAGGTCATTGGAACAATATTCATACTTTTTTCTTTATCACCGCAACTGGCACCCATTCTAGGTGTTCTGATGCTCGCAGTTTCCATTTCAATTGCTGTCTACAAGAGATCGACATTGCCAGTTTTTAAAGCACATGGGAAGGCCCAAGCATCTATATCTGACTGTGTGACTGAAACGTTTTCAGCTATTCGAACAGTAAGATCCTTTGGTGGTGAAAAGCGCCAAATGTTCTCTTTTGCTAATCAGGTTCTATCTTTCCAATCAAGTGGGATAAAGCTTGGGACTTTCAAATCTGTAAATGAATCTTTAACTAGAGTTGCAGTTTATATTTCTTTAATAGCATTATACTGTCTTGGAGGAAGCAAGGTTAAGGCGGGTGAACTCTCTGTTGGAACCATGGCATCTTTTATCGGTTATACTTTCACTTTAACATTCGCTGTTCAAGGACTGGTTAATACTTTTGGAGATCTCCGTGGAACTTTTGCTGCTGTTGAGAGGATCAACTCTGTTTTTTCTGGAGTTCAAGTTGATGATGCCCTGGCTTATGGCTTAGAAAGAGAACTGAGACAAAAAACAGTGGAGGATGAAAACTATAAATTGGTCTTATCTAATATTTCTACCGACAATAACCAAAAAAATTATTTTCACTTTATGTCAGCTCTTAAAACATCAAGCAATTTATTTAGCATAGCTTGGTCCGGAGATATTTGCCTTGAAGATGTATATTTCTCTTATCCATTAAGGCCGGATGTGGAAATCTTACGTGGCTTAAATTTAAGACTAAAATGTGGAACTGTAACTGCACTGGTGGGTCCAAGTGGTGCAGGCAAAAGTACAGTAGTCCAGCTATTGTCTCGTTTTTATGAGCCAACAAGTGGCTGTATAACAGTTGCAGGAGAGGATGTCCGAACATTTGACAAGAGTGAATGGGCCCGGGTTGTTTCCATTGTAAATCAAGAGCCTGTTTTGTTTTCGGTGTCTGTTGGAGAAAACATTGCATATGGGCTTCCAGATGAAGATGTCTCTAAAGAAGATGTCATTAAGGCAGCAAAAGCTGCAAATGCTCATGACTTTATAATTTCATTACCACAGGGCTATGATACACTTGTTGGTGAGCGTGGAGGCCTATTGAGTGGAGGACAGAGACAGAGAATTGCTATAGCCCGCGCTCTCCTAAAGAATGCTCCCATCCTTATACTTGATGAGGCTACCAGTGCCCTGGATGCTGTCAGTGAGCGCTTGGTCCAGGAAGCTCTCAACCATTTGATGAAGGGAAGAACCACATTAGTAATAGCCCACCGATTAAGCACAGTTCAAAATGCATACCAAATTGCAGTCTGTTCTGAGGGGAGGATTGCAGAATTAGGCACTCATTTTGAGCTATTGGCTAAGAAGGGCCAATATGCTTCACTGGTTGGCACACAAAGGCTTGCCTTTGAATAA 2109 0.4296 MASATLSLHCPLLLHSPLSTKITKPPLSLRPLLLPRPLHSRFLLPPPRAYVTAPASDPNFGDPDPKLIGLVPEKAKPQNVITWSLLCTLLMNHKLRLTLVFATLFACSTCTLSMPLFSGRFFEVLIGARPEPLWKLLTKIGVLYALEPLLTIIFVINMNIVWEKIMSTLRAQIFGRILIQKIEFFDKYKVGELTGLLTSDLDSLKNIVSENVSRDRGFRALSEVIGTIFILFSLSPQLAPILGVLMLAVSISIAVYKRSTLPVFKAHGKAQASISDCVTETFSAIRTVRSFGGEKRQMFSFANQVLSFQSSGIKLGTFKSVNESLTRVAVYISLIALYCLGGSKVKAGELSVGTMASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSVFSGVQVDDALAYGLERELRQKTVEDENYKLVLSNISTDNNQKNYFHFMSALKTSSNLFSIAWSGDICLEDVYFSYPLRPDVEILRGLNLRLKCGTVTALVGPSGAGKSTVVQLLSRFYEPTSGCITVAGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEDVSKEDVIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQEALNHLMKGRTTLVIAHRLSTVQNAYQIAVCSEGRIAELGTHFELLAKKGQYASLVGTQRLAFE* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0946 702 ProSitePatterns ABC transporters family signature. 599 613 IPR017871 GO:0005524
Vra1g0946 702 Gene3D - 456 699 IPR027417 -
Vra1g0946 702 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 99 381 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra1g0946 702 CDD ABC_6TM_TAP_ABCB8_10_like 101 389 - -
Vra1g0946 702 SMART AAA_5 485 659 IPR003593 -
Vra1g0946 702 Pfam ABC transporter 476 627 IPR003439 GO:0005524
Vra1g0946 702 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 458 696 IPR003439 GO:0005524
Vra1g0946 702 Gene3D ABC transporter type 1, transmembrane domain 71 394 IPR036640 GO:0005524|GO:0016021
Vra1g0946 702 Pfam ABC transporter transmembrane region 98 368 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra1g0946 702 SUPERFAMILY ABC transporter transmembrane region 86 389 IPR036640 GO:0005524|GO:0016021
Vra1g0946 702 CDD ABC_MTABC3_MDL1_MDL2 458 697 - -
Vra1g0946 702 PANTHER ABC TRANSPORTER B FAMILY MEMBER 28 46 700 - -
Vra1g0946 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 449 697 IPR027417 -
Vra1g0946 702 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 46 700 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0946 Vra-Chr1 11115585 11125261 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0946 455 702 Calmodulin-binding Proteins AT2G36910 55.378 1.54e-75 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0946 K05657 - gmx:100791034 1227.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0946 1 11115585 11125261 Vra1g0946 1 11115585 11125261 ECH