Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0944 ATGGCTGTTGCCAAGAGCGACAGCAACAGTGAACCTTGTACTTCATACAATTGTTACAAAGTAGCAGCCTTGACTGAGACCATATTAGAGACAAGTCAAGTCTCTAATCTAAAAGATCGGTACGTTCTCGGCGAGCAATTGGGTTGGGGACAGTTTGGTGTCATAAGGGCATGTTCCGACAAGTTAACAGGAGAGGTTTTGGCCTGCAAATCAATTGCTAAAGATAGGTTGGTTACTTCGGATGATTTGAGGAGTGTAAAACTTGAGATAGAGATAATGGCTAGGCTATCCGGTCACCCCAATGTTGTGGATCTCAAAGCAGTTTATGAAGAGGAAGGCTTTGTTCACTTGGTGATGGAACTTTGTGCTGGAGGAGAGCTTTTTCATCGATTAGAGAAGCATGGATGGTTTTCAGAATCTGAAGCCAGGGTTATCTTCAGGCACCTTATGCAGGTGGTTTTGTATTGTCATGAAAACGGGGTTGTTCATAGAGATTTGAAGCCTGAGAACATTCTCTTAGCAACAAGATCCTCCTCATCTCCTATTAAATTGGCAGATTTTGGACTAGCAACCTACATCAAGCCCGGTCAAAGTTTGCACGGTTTAGTTGGGAGTCCTTTCTACATAGCTCCAGAGGTATTAGCTGGTGCTTATAACCAGGCTGCTGATGTGTGGAGTGCAGGTGTAATTCTTTACATTCTGTTGAGTGGGACGCCTCCGTTTTGGGGGAAGACTAAATCCCGGATTTTTGAAGCTGTTAAAGCTGCTTCCCTCAAGTTTCCATTGGAACCTTGGGATCGCATTTCTGAATCAGCTAAGGATTTGATCAAGGGAATGCTGTGTACAGACCCTTCTCGAAGACTCACTGCCCAAGAGGTTTTAGATCATTGCTGGATGGAAAGCAACCAAACAAATCAAGAACAACTAGGTGAAAATCAAATCCAAAGTTGCAAACAATGGGATGTTGGTGGCAGCTCATTCTCAGCTTCTTTCATGTCCAGGAATCAGGACATTAGCTTTGGCGCTGGCTCTCCTACATGTGATGCTCAATCGCCTACTTTCACATGCAGATCATCATTTTCTTCTTTTTTGGAAGAACCAGTCACACCATGTGTGCTATCTGCCGGGTTTTCATTCAAGAGTGTAGGCGATTCCTCTGGTTTGGAATTCTCTTCTCCTATTCCCTCGATGCTTAGCTTTTCATTCCTGAGTCCCTCTCCTGTCGTTGAACACAAGAGTTGTAAATTGGAGTGTTCAGCTAACATGTCAGATGTAGATGCAATTGCTGGAGAAGCCAGCTTGGGAAAGTTACTTTTACTACAAGATTCTCATCTTTGCATTGAACACGATGCTAAAGAAACTAATCGCAAGCCTACTGAGGCTAAAAGGTCAATTGGAATGAATGGACACAAGGTACTGGGAATCCACAGCAAGAGAAACAGGACAATTGGACTTGGTGAGTGTGAGCAACTTGACTTTGTAGTGACTGAATCAGTCATCCGTTGGTCATCCTGCACTCAACTACCAACATCTTTGAGATCATCTCTCGTTTGCTAA 1557 0.4367 MAVAKSDSNSEPCTSYNCYKVAALTETILETSQVSNLKDRYVLGEQLGWGQFGVIRACSDKLTGEVLACKSIAKDRLVTSDDLRSVKLEIEIMARLSGHPNVVDLKAVYEEEGFVHLVMELCAGGELFHRLEKHGWFSESEARVIFRHLMQVVLYCHENGVVHRDLKPENILLATRSSSSPIKLADFGLATYIKPGQSLHGLVGSPFYIAPEVLAGAYNQAADVWSAGVILYILLSGTPPFWGKTKSRIFEAVKAASLKFPLEPWDRISESAKDLIKGMLCTDPSRRLTAQEVLDHCWMESNQTNQEQLGENQIQSCKQWDVGGSSFSASFMSRNQDISFGAGSPTCDAQSPTFTCRSSFSSFLEEPVTPCVLSAGFSFKSVGDSSGLEFSSPIPSMLSFSFLSPSPVVEHKSCKLECSANMSDVDAIAGEASLGKLLLLQDSHLCIEHDAKETNRKPTEAKRSIGMNGHKVLGIHSKRNRTIGLGECEQLDFVVTESVIRWSSCTQLPTSLRSSLVC* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0944 518 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 511 - -
Vra1g0944 518 Gene3D Transferase(Phosphotransferase) domain 1 128 330 - -
Vra1g0944 518 Gene3D Phosphorylase Kinase; domain 1 42 127 - -
Vra1g0944 518 CDD STKc_CAMK 40 298 - -
Vra1g0944 518 SUPERFAMILY Protein kinase-like (PK-like) 38 364 IPR011009 -
Vra1g0944 518 Pfam Protein kinase domain 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0944 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Vra1g0944 518 SMART serkin_6 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0944 518 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 34-LIKE 6 511 - -
Vra1g0944 518 ProSiteProfiles Protein kinase domain profile. 41 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0944 518 ProSitePatterns Protein kinases ATP-binding region signature. 47 74 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0944 Vra-Chr1 11104396 11108001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0944 28 322 EF-hand Containing Proteins AT3G57530 48.311 3.77e-99 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vra1g0944 Pkinase 1.4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0944 - - gmx:100776088 909.827