Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0936 ATGGCATTTTTGCCATATTCAGAATGCATTGTTCTTTGTGCAACCATTTTTCTCTTCTTCACGTTATCATCATCAATGTCTCAAGCAGAGCTTGATGCTCATTACTACGATAAAACATGTCCACAGGCAGAGAACATAATTTCAGACACTGTTCTCAGTGCTTCCAAATTTGACCCAAAAGTCCCAGCTCGGATCTTGAGGATGTTCTTCCATGATTGTTTCATAAGGGGCTGTGATGCATCGATATTGCTGGACTCAACTCCCAAAAACCTGGCTGAAAAAGATGGTCCACCTAATCTCTCTGTTCATTCATTCTATGTCATTGATGAAGCCAAGACCAAGCTTGAGAAAGCTTGTCCACACACTGTTTCTTGTGCTGATATAATCGCCATTGCAGCTAGAGATGTGGTAGCACAGTCTGGAGGACCATATTGGAATGTGCTAAAAGGAAGAAAAGATGGAAGGGTGTCGAAGGCATCAGAAACAGTGAACTTGCCAGCTCCAACCTTAAATGTGAATGAACTGATTAAGAGTTTTGCAAAGAGAGGTTTAGGAGTGAAAGATATGGTGACTCTCTCTGGTGGCCACACTCTTGGATTTTCACACTGTTCTTCTTTCCAAGCAAGAGTTCATAACTTCAGTTTGTTGCATGCTATTGACCCTAGTTTGAACACTGAGTTTGCACTAGACCTGATAAGGAACTGTCCAAAACTAAACACAAACCCCAATGCTGGACACTTCCTGGACGCAACATCATCGGTGTTTGACAATGATTACTATAGACAGTTGCTGGTCGGAAAGGGTTTGTTCTCATCAGATCAGTCTCTTGTTGGGGATCAAAGAACCAGGTGGATTGTGGAAGCATTTGCCAAAGATCAGGGCTTCTTCTTCAGAGAATTTGTGGCTTCAATGTTGAAACTTGGTAATGTGGGGGTCTCTCAAAATGGGGAAGTCAGACTTAATTGCAAGGTTGTCAATTGA 981 0.422 MAFLPYSECIVLCATIFLFFTLSSSMSQAELDAHYYDKTCPQAENIISDTVLSASKFDPKVPARILRMFFHDCFIRGCDASILLDSTPKNLAEKDGPPNLSVHSFYVIDEAKTKLEKACPHTVSCADIIAIAARDVVAQSGGPYWNVLKGRKDGRVSKASETVNLPAPTLNVNELIKSFAKRGLGVKDMVTLSGGHTLGFSHCSSFQARVHNFSLLHAIDPSLNTEFALDLIRNCPKLNTNPNAGHFLDATSSVFDNDYYRQLLVGKGLFSSDQSLVGDQRTRWIVEAFAKDQGFFFREFVASMLKLGNVGVSQNGEVRLNCKVVN* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0936 326 Pfam Peroxidase 54 292 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra1g0936 326 PRINTS Haem peroxidase superfamily signature 62 76 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra1g0936 326 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra1g0936 326 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra1g0936 326 PRINTS Haem peroxidase superfamily signature 188 203 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra1g0936 326 PRINTS Haem peroxidase superfamily signature 248 263 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra1g0936 326 ProSiteProfiles Plant heme peroxidase family profile. 30 326 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra1g0936 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 188 198 IPR019793 -
Vra1g0936 326 PANTHER PEROXIDASE 25-RELATED 12 325 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0936 326 SUPERFAMILY Heme-dependent peroxidases 31 326 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vra1g0936 326 Gene3D - 34 326 - -
Vra1g0936 326 PANTHER PEROXIDASE 66 12 325 - -
Vra1g0936 326 CDD secretory_peroxidase 30 325 IPR033905 GO:0004601|GO:0042744
Vra1g0936 326 Gene3D Peroxidase, domain 2 166 307 - -
Vra1g0936 326 PRINTS Plant peroxidase signature 40 59 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0936 326 PRINTS Plant peroxidase signature 64 84 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0936 326 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0936 326 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0936 326 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0936 326 PRINTS Plant peroxidase signature 187 199 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0936 326 PRINTS Plant peroxidase signature 246 261 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0936 326 PRINTS Plant peroxidase signature 262 279 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0936 326 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0936 Vra-Chr1 10962262 10963961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0936 27 326 Peroxidase AT5G51890 70.432 7.00e-163 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0936 K00430 - gmx:100795422 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0936 1 10962262 10963961 Vra1g0936 1 10962262 10963961 ECH