Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0935 ATGGGCAAGGAGGGGTATTTTGGTGGAAGATCATCAAAGAAAGGTGTAGTAGTTGGAGGAGGAGGAGGTGGAGGAGGTGATGCTGAAACACAAGCCCCTTCTGGTTGCATGTGTGCTGTTTTTCAGTTCTTTGATTTCCATCCCTTTCACTTTCCCAACATAACCCAACAACAAACATCTTTCAAACCACCCTCATGCACTTTAGAAGACCATGCCACAGTCTCCAAAGGTGCTGAAGCACCTAGGAACAGCTTGGAATCAGAGGATGCTGATGCTCCTGTTTCATCTCTCTCTTCAAAACAAGAGGATTTTAAAATTCCTAATATTATGCAAATTAAGACAAGTGGAGGTACAAGAACAGGTGGTGGAAATTTGAATGACTTGTCTGCAGATATCACCAGCTCACCAGGGACAAAGACACCAACTTTGGTGGCCAGGTTAATGGGTTTGGATCTTCTTCCAGGGACACACTCACCCTCTTTCTCTTCTTCTTCTTCTTCTTCCTGTCTTTCCGCTCCCAACACACATGGCTATGCGCCACATCTGCACCACCACCTGAGGCACAAGCAACATGTCCAAACGAAGCATAGAAACAGCATAGACAGCAGTGACATTGCAGCCTCGAGATCTTTGCCTGAGACACCAAGAATCTCCTCAGCAAGAAGATCAGATGTTGATTATTACCACCACAGATTCTCACTCCAAATCAACAAGGAAAACATGAATCTTGCTGAGGATTTGGAGCTCCCTAGGCTCTCGTTTTCTAAAAGAAAGTGTGATGAGAACAATAGCAGCAGGAGTCCAAGCCACTATGCTAGGCAAATAGTCAAACAGGTTAAGGATAGTGTGAGCAGAAAAGTTGGCCAAGACATCACAAACACTCTCAAAACAAGAGAGGAAATTGTAGGCCAACTCAAAAGCAAAAAATCTTCCAAAACATCACCACTGAAAGCAATTAATGAAACTGAAAATAGTCCACTGAAACCACACTCAAGGCTTAGATTCATTGACAAGAACAAACAAAACACCACAGCCACACCATCACCACTCACCCCAAAAGACCAAAACATGCTAAAACTACCATCACCTCCTCCTCCAGTTAACACTCAACTTTCAAGAGTTTTAACAAAACCAAAGCCTCAAACATTATCTTTGCCAGAGCACCAAGATTTTCATCAGAACACCAAATCTGTCCCAAAATGCAAAATGGCTACCAATGAAAAGTTCAACTCAAGGCTCAAAAGGCCTCCTCAGACATCCGACATAATCAGAAACAAACAAGAAGAATCGTTCGTCATTCGTCCCACATCGCCTACCAGAGCCAGTGACACCAAAACTTCTAAAAGCAAGAAAATTCATCCATTGTCAAGTAATCTTCTCAACAACATCAACACTGTACCAAATCTTCTTCCTGTCAAGACAGACCCTTCTCCTCCAGCAACCAAAATTCCTCCAAAACAGTCACAGGTGTGTGATAGTCAAGAGTCCAAAAGCAGCTCACAGTTATCTAGTTGTTCGCGCCAGAGGTACAAACAAGAAGGAACAACCACACTCGCCACCCGAGAAACGTCACAGAACAAACATAACAGTGCCTCCGCCACCATTGGAGCACCGCAGCCTCACACCCCACAAGAGCTTCACTACATCACAGCAATCCTTGCCCGTACAACTGCCCTAAACGTGGAGGACAACCCCACAAACCCACCATTAACGTCCCACCAACACCACCACTGGTTCTCCCCAACCCACTCACTGGACCCGTCAATCTTCTTCCACCTGGAACACCTTGCCGCCAACAAAGATCTTAGCTTTTCCCCGAAAGAACAACTGGGTCACCATTGGAATCGGAAGTTACTGTTCGATCTGGTGGATGAGGTTCTGAAGGAGATTCTGCAAGAGAGAGGGAAGAATGGGCTTTGGTTTTGGAAGCGTGTCGGCGGTGGTTGGCACAGTGGGAGCATTGTGGAGAGGGTGTGGAAGAGGGTGGGTGAGTTCCCAGGTGCGAAGTGTGAGGTGTTGGAGGACATTGATGGGTTGATCGAGGGAGAGGACATGCAGAGAGAGAAGGATGGTGAAGGGTTGGAGGAAGAAGGAGAAGGATTGGTGGCAGAGATTGAAGGGAACATATGGGACACGTTAGTGCATGAAACGGTTATGCTTATAGATTGCTTGGGAAATGTGAGAAAAGAGAAGTTATTAGATGATGTGAAAATATCACATCTTTGTACTATCTCTCAATTTTAA 2244 0.4532 MGKEGYFGGRSSKKGVVVGGGGGGGGDAETQAPSGCMCAVFQFFDFHPFHFPNITQQQTSFKPPSCTLEDHATVSKGAEAPRNSLESEDADAPVSSLSSKQEDFKIPNIMQIKTSGGTRTGGGNLNDLSADITSSPGTKTPTLVARLMGLDLLPGTHSPSFSSSSSSSCLSAPNTHGYAPHLHHHLRHKQHVQTKHRNSIDSSDIAASRSLPETPRISSARRSDVDYYHHRFSLQINKENMNLAEDLELPRLSFSKRKCDENNSSRSPSHYARQIVKQVKDSVSRKVGQDITNTLKTREEIVGQLKSKKSSKTSPLKAINETENSPLKPHSRLRFIDKNKQNTTATPSPLTPKDQNMLKLPSPPPPVNTQLSRVLTKPKPQTLSLPEHQDFHQNTKSVPKCKMATNEKFNSRLKRPPQTSDIIRNKQEESFVIRPTSPTRASDTKTSKSKKIHPLSSNLLNNINTVPNLLPVKTDPSPPATKIPPKQSQVCDSQESKSSSQLSSCSRQRYKQEGTTTLATRETSQNKHNSASATIGAPQPHTPQELHYITAILARTTALNVEDNPTNPPLTSHQHHHWFSPTHSLDPSIFFHLEHLAANKDLSFSPKEQLGHHWNRKLLFDLVDEVLKEILQERGKNGLWFWKRVGGGWHSGSIVERVWKRVGEFPGAKCEVLEDIDGLIEGEDMQREKDGEGLEEEGEGLVAEIEGNIWDTLVHETVMLIDCLGNVRKEKLLDDVKISHLCTISQF* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0935 747 MobiDBLite consensus disorder prediction 303 357 - -
Vra1g0935 747 MobiDBLite consensus disorder prediction 157 174 - -
Vra1g0935 747 MobiDBLite consensus disorder prediction 76 100 - -
Vra1g0935 747 MobiDBLite consensus disorder prediction 411 443 - -
Vra1g0935 747 MobiDBLite consensus disorder prediction 307 326 - -
Vra1g0935 747 MobiDBLite consensus disorder prediction 180 194 - -
Vra1g0935 747 Pfam DUF761-associated sequence motif 132 158 IPR032795 -
Vra1g0935 747 PANTHER LOW PROTEIN: M-PHASE INDUCER PHOSPHATASE-LIKE PROTEIN 1 720 - -
Vra1g0935 747 MobiDBLite consensus disorder prediction 484 539 - -
Vra1g0935 747 MobiDBLite consensus disorder prediction 451 471 - -
Vra1g0935 747 MobiDBLite consensus disorder prediction 409 541 - -
Vra1g0935 747 MobiDBLite consensus disorder prediction 338 355 - -
Vra1g0935 747 MobiDBLite consensus disorder prediction 199 217 - -
Vra1g0935 747 MobiDBLite consensus disorder prediction 157 222 - -
Vra1g0935 747 PANTHER DUF4378 DOMAIN PROTEIN 1 720 - -
Vra1g0935 747 Pfam Domain of unknown function (DUF4378) 545 716 IPR025486 -
Vra1g0935 747 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0935 Vra-Chr1 10944796 10948411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0935 110 717 TRM (TON1 Recruiting Motif) Superfamily AT5G62170 34.281 4.97e-60 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0935 - - gmx:100795947 942.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0935 1 10944796 10948411 Vra1g0935 1 10944796 10948411 ECH
Vra1g0935 1 10944796 10948411 Vra8g2287 8 41139938 41143358 PCT