Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0932 ATGGGAAGAGGAAGGGTTGTTCTGGAGAGAATAGAGAACAAGATCAACCGTCAAGTAACTTTCTCAAAGCGCAGAAGTGGGTTGCTCAAGAAGGCCTTTGAGCTTTCTGTGCTTTGTGATGCAGAAGTTGCCCTTATCGTCTTTTCTAGCCGTGGCAAGCTTTTTCAGTATAGCAGCACTGATATTAATAAAATCGTTGAGAGGTATCGCCAATGTCGTTACAGCAAGTTACAGACTGGTGATTCATCGGAACTCGAATCACAGAGTTCATATCATGAATTCTTGAAATTAAGAGCGAAATACGAATCTCTTGAGCGGACACAAAGGCATTTTCAAGGAGAAGAACTTGAGCCTCTTAGCTTTAAAGAATTGCAGAGTCTTGAGAAACAACTAGACATTACGCTTGCTCTAACTCGACAGCAGCAAACAAAGAAGCTCATGGCACGAGCTGATGAATTACGCGAAAAGGTGCGAAAAATGGAAGATCTTAACAAGCAATTGGAATCCAAGGAAAAAGATGAATTTTCAAGCCTCATTCTTGAGAATAACAATTTTTTTCAATTGCATGCTACACAAGCCGATCAATTTGAATCTGGAACAACACTAAACACATGTAGGTTTCAACAACAAGATGTTGGTTCGAAAGAAAGAGCAGTTGATACGAGGAAAGAGGGTAACCATAGCACTCACACCAAAAGCAATGGATGGTTGTAG 714 0.4062 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSSRGKLFQYSSTDINKIVERYRQCRYSKLQTGDSSELESQSSYHEFLKLRAKYESLERTQRHFQGEELEPLSFKELQSLEKQLDITLALTRQQQTKKLMARADELREKVRKMEDLNKQLESKEKDEFSSLILENNNFFQLHATQADQFESGTTLNTCRFQQQDVGSKERAVDTRKEGNHSTHTKSNGWL* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0932 237 MobiDBLite consensus disorder prediction 213 229 - -
Vra1g0932 237 MobiDBLite consensus disorder prediction 209 237 - -
Vra1g0932 237 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vra1g0932 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vra1g0932 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vra1g0932 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vra1g0932 237 ProSiteProfiles K-box domain profile. 87 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra1g0932 237 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 237 - -
Vra1g0932 237 Coils Coil 143 173 - -
Vra1g0932 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vra1g0932 237 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Vra1g0932 237 PANTHER MADS BOX PROTEIN 1 237 - -
Vra1g0932 237 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vra1g0932 237 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Vra1g0932 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vra1g0932 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vra1g0932 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0932 Vra-Chr1 10915639 10921537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0932 1 170 MADS-box Gene Family AT2G45650 56.471 4.06e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vra1g0932 K-box 3.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0932 K09264 - gmx:100793681 405.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0932 1 10915639 10921537 Vra7g1961 7 39097684 39102896 ECH
Vra1g0932 1 10915639 10921537 Vra1g0932 1 10915639 10921537 ECH
Vra4g1143 4 18499072 18506003 Vra1g0932 1 10915639 10921537 ECH
Vra1g0932 1 10915639 10921537 Vra4g1142 4 18486040 18491898 PCT
Vra8g2290 8 41163212 41169826 Vra1g0932 1 10915639 10921537 PCT