Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0928 ATGAACTTGAAGCAATACTGTTGTTTCCTCTCAGACGAAGGGCAAAGCAAAATTCAAATTGCTAGGAAGAAGAACAATAGGGATTATCCATGGGAAATGTACACCTTGAAGGAGTTGCTTAGAGCCACAAACAACTTTCATCAAGATAATAAGATTGGAGAGGGTGGATTTGGCAGTGTATATTTTGGTCGAACAAGTAAAGGAGTTCAGATTGCAGTGAAGCGATTGAAGACAATGACTGCCAAAGCAGAAATGGAGTTTGCAGTGGAAGTGGAAGTATTAGGAAGAGTGAGGCATAAGAATCTGTTGGGGTTGAGGGGATTCTATGCAGGAGGAGATGAAAGGTTGATTGTGTATGATTACATGCCTAATCATAGCTTGCTCACACATTTGCATGGTCCACTTGCCAAGGAATGTCAGTTAGATTGGGCGAAAAGAATGAGCATAGCAATTGGAGCTGCTGAAGGCTTATTGTATTTGCACCATGAGTCAACTCCTCACATCATACATAGAGATATAAAAGCGAGCAATGTTCTTCTGGATTCTGAATTCCAAGCTAAGGTTGCTGATTTTGGTTTTGCAAAGCTGGTACCAGATGGTGTGACCCATATGACCACAAAGGTTAAAGGCACCCTAGGATATCTGGCACCAGAATATGCTATGTGGGGAAAAGTATCTGAGAGTTGTGATGTTTACAGCTTTGGAATTCTACTGTTGGAGATAATCAGTGCCAAGAAACCCATTGAGAAATTTCCTGGAGGAGTGAAAAGGGATATTGTTCAATGGGCCACACCATTTGTGAACAAAGGTCTCTTTGGCAATATAGCAGATCCAAAACTGAAGGGAAGATTTGATTTGCAGCAGTTGAAAAATGTGATCACAATAGCTCTTAGATGCACTGATACTAGCGCAGATAAGAGGCCTAACATGAAAGAGGTTGTCAATTGGCTCAAGAATGGTGTAGGGAGCATTTAA 975 0.4123 MNLKQYCCFLSDEGQSKIQIARKKNNRDYPWEMYTLKELLRATNNFHQDNKIGEGGFGSVYFGRTSKGVQIAVKRLKTMTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGDERLIVYDYMPNHSLLTHLHGPLAKECQLDWAKRMSIAIGAAEGLLYLHHESTPHIIHRDIKASNVLLDSEFQAKVADFGFAKLVPDGVTHMTTKVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIISAKKPIEKFPGGVKRDIVQWATPFVNKGLFGNIADPKLKGRFDLQQLKNVITIALRCTDTSADKRPNMKEVVNWLKNGVGSI* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0928 324 ProSiteProfiles Protein kinase domain profile. 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0928 324 PANTHER OS01G0253100 PROTEIN 4 322 IPR045271 GO:0004714|GO:0006468
Vra1g0928 324 Pfam Protein kinase domain 46 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0928 324 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Vra1g0928 324 PIRSF ILK 10 321 - -
Vra1g0928 324 Gene3D Phosphorylase Kinase; domain 1 10 121 - -
Vra1g0928 324 Gene3D Transferase(Phosphotransferase) domain 1 122 321 - -
Vra1g0928 324 SUPERFAMILY Protein kinase-like (PK-like) 27 319 IPR011009 -
Vra1g0928 324 SMART serkin_6 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0928 324 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 4 322 - -
Vra1g0928 324 CDD STKc_IRAK 52 314 - -
Vra1g0928 324 Coils Coil 321 324 - -
Vra1g0928 324 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0928 Vra-Chr1 10801489 10802946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0928 33 313 Trihelix Transcription Factor Family AT1G68690 45.614 1.11e-83 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Vra1g0928 Pkinase 1.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0928 - - gmx:100800710 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0928 1 10801489 10802946 Vra1g0928 1 10801489 10802946 ECH
Vra1g0928 1 10801489 10802946 Vra8g2296 8 41220061 41221721 PCT