Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0927 ATGGATGAAAACAAGAAGTGGATGCATAAGGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAAACTCTGCAACAACCTCAGATCGCTTCTGCCTTTAGAATATATTAAGGGAAAGCGTTCAACCTCAGATCATGTGCATGAGGCTATGAATTACATCAACCACCTTCAAGATAAGGTAAAGCAATTGCAAGAAAAGAGGGATGCGTTGTTGAAGGTGTCTAATAATTTGAGCAGCATTGTTCCTGAGAATGAAAGCTCTTGTGTCACTCATCTTCCACCTTTGGTTTTTGTTCACCCTTTCCCTGGGGGCATTGAGATTATTTGCAGTCATAGCTTCAAGAAAAGTGTGTTTCCCATGTCAAGATTATTGGACATTCTGCATAAAGAAGGACTTGACGTGGTCAACACTACTTCCATCAGAAGAAATGGTAGATTCATACATACCATACAATCAGAGGATCCCAATCATTCTAATATGGTTGACACTGATTACTCTGAACTGCAAATAAAGATTATGGAGGCATTATCATCTTCAAGTTTGCAAGAGACTTTGCCTGTACCTGAAAATTGCTAA 576 0.3924 MDENKKWMHKETERQRRQEMGKLCNNLRSLLPLEYIKGKRSTSDHVHEAMNYINHLQDKVKQLQEKRDALLKVSNNLSSIVPENESSCVTHLPPLVFVHPFPGGIEIICSHSFKKSVFPMSRLLDILHKEGLDVVNTTSIRRNGRFIHTIQSEDPNHSNMVDTDYSELQIKIMEALSSSSLQETLPVPENC* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0927 191 Pfam Helix-loop-helix DNA-binding domain 6 57 IPR011598 GO:0046983
Vra1g0927 191 PANTHER TRANSCRIPTION FACTOR 1 184 - -
Vra1g0927 191 Coils Coil 46 73 - -
Vra1g0927 191 SMART finulus 10 62 IPR011598 GO:0046983
Vra1g0927 191 CDD bHLH_AtORG2_like 5 75 - -
Vra1g0927 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 56 IPR011598 GO:0046983
Vra1g0927 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 77 IPR036638 GO:0046983
Vra1g0927 191 Gene3D - 1 89 IPR036638 GO:0046983
Vra1g0927 191 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 184 IPR015660 GO:0003700|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0927 Vra-Chr1 10789652 10791783 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0927 3 153 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51790 39.869 7.94e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra1g0927 HLH 5.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0927 - - pvu:PHAVU_004G124200g 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0927 1 10789652 10791783 Vra1g0927 1 10789652 10791783 ECH
Vra1g0927 1 10789652 10791783 Vra8g2297 8 41229898 41231647 PCT