Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0925 ATGCCATCCCGACAACTCTCCACCTCATCAGACACACCGCCACATCATCATCATCACCACTTTTTCATACCTCTCCTCGCCGTCACCATCTCAGCCTTCTTCCTCCTCCTTCTCTTCCTCTTCCTCTTCCTCTGCCTCCACCGTACCCTCACCCGCAAACGCGCCGCCCACCCTCCTCCTCCTCCTCCTTCCTCTTCCCCCCCGCACCGCCTCTCCTTCTCCGTCCTCCGCCGCGCCACCAATTCCTTCTCCTCCCGCCTCGGCCACGGCGGCTTTGGTCCCGTATTCGCCGGCACCCTCGCCGGTGTCCCCGTCGCTGTCAAACTCATGGACTCTGCCTCCTCACACCAGGGCGAGCGGGAGTTCCACAACGAGCTTTTTTTCGCCTCCAAGCTCCTCTCTCCCCATGTCATCACCGCCACGCACTTCTCCTCTGACCCCAAACGACGCCGCTTCCTCTTGGTCTACGAGCTCATGCAAAACGGTAACCTCCAAGACGCGCTTTTGCACCGCAAGTGCCCCGAACTCTCGAACTGGAACACCCGCTTCTCAATCATTCTCAATATAGCCAAAGGAATTCACTTTCTCCACTCCTGTGACCCCCCTGTTATCCACGGCGACATAAAGCCGAGTAACGTTTTGCTTGATAGGGATTTCTCTCCCAGAATTGGCGACTTCGGGTTAGCGAGGTTGAGCTCGGAGCCTCCGAGGTTTGAAATTGAGGTCCTGGAGTGTGGTAGTGTTAATAATGATGAAGAGAAGCGGAAGGTGAAGGAGGAGGAGGTTGAGGATTGCGGATCGGTGGCGAGTACTCACAGTGTTTTTATGGAAGAAGGTAGCTTGGGGGTGGAGCAATCTCCTTCGCCAGAGACTGCGGCGATGATGGCGATGACTTCGCCAGAGACGGGTTTGGCGGTGGCAGGGGCGTCGCCGGGGTTTGAGAAGGAGGATGCGAAGAAGATGAACGGGAAAGGGTTGAAGAGTAACTCGGTGAGGGATTGGTGGTGGAAGCATGAGAATGACGTTGGGAGTGGGGAGAGTAAGAAGGTTAAGGATTATGTGATGGAGTGGATTGGAAGGGATGTGAATAAGGAGAGGGTGAAGGGTGGAATTGAATGTGGGGATGTGGAGATGGGAAAGGAAGAGACCAAGAAGAAAAAGAAGAAGAGAAGGGTGAAGGAAATGGAATGGTGGGAGTCAATGGAAGAGGAGAAGTTTGACGGGGTTGTGAAGAGGAAGAGAAAGACCGTGAGGGATTGGTGGAAAGATGAGTGTTTTGAGGAGAACGAAAAGAAGGATAAGAAGAAAAAGAAGAAGAGGAAGGGTGGGGATGTAAAGAATAATAATATTGAGAATGGTGATGATTGGTGGGTGAGTGATGATGCATTGGATAAAAGGAAGGGAAAGAGTAGGAGCAGAAACAACCGTGGGAACATGGATTGGTGGATGGATGGATTGAGTGGTGAGTTATGGAGAGGAAGGAGGAATAATAGCTTTGATTCTGCAAGTGGGGAGATTCCAAAGAGTGGTGGTGTTAGCAGTACTCCTAGTATGAGGGGAACTGTGTGTTATGTGGCTCCTGAGTGTGGCTATGGTGGGGATGTGACTGAGAAGTCTGATGTGTATAGTTTTGGGGTATTGTTGCTTGTCATAATTTCTGGGCGGCGACCACTTCAAGTGAGTGGTTCACCTTTGTCTGAGTTTCAGAGAGCGAATCTACTTTCCTGGGCACGCCATTGTGCACGAAATGGGAAGCTTTTAGAGTTGGTTGATGAGTCTCTGCAGTTGTTGGATAAAGAGCAGACTCTTCTCTGCATCAAGGTGGCTTTGCTTTGTCTGCAGAAGTCACCTATTCGTCGTCCTTCAATGAAGGAGGTTGTCGGAATGCTCAGTGGGGTGTTGGAACCACCCCAATTGCCTGTTGAGTACTCTCCTTCAACCCCTTCTCGCTACCCTTTCAAGTCTAGGAGAAAAGGAAGAATTTGTCTCGGCTTTACAGTATGTATTTCTAGGTTGAAGAGCCATGCCGGTAATACCAGTTGTAAGCGAAAATCGGAATTTGAAATGGTTAAATTCTTTGAAGCAGAAGAATCTTTGTATAAGCTTTTCTCATGTGATTGTGTTAATGGTTGTGATAGTAGAACTGGGGCACATTTGTCCAAAGATACTATGTTTGGGAAGTACGACCGAGTATGTAAAGAAAATTCTTATATTTGTTAA 2220 0.4982 MPSRQLSTSSDTPPHHHHHHFFIPLLAVTISAFFLLLLFLFLFLCLHRTLTRKRAAHPPPPPPSSSPPHRLSFSVLRRATNSFSSRLGHGGFGPVFAGTLAGVPVAVKLMDSASSHQGEREFHNELFFASKLLSPHVITATHFSSDPKRRRFLLVYELMQNGNLQDALLHRKCPELSNWNTRFSIILNIAKGIHFLHSCDPPVIHGDIKPSNVLLDRDFSPRIGDFGLARLSSEPPRFEIEVLECGSVNNDEEKRKVKEEEVEDCGSVASTHSVFMEEGSLGVEQSPSPETAAMMAMTSPETGLAVAGASPGFEKEDAKKMNGKGLKSNSVRDWWWKHENDVGSGESKKVKDYVMEWIGRDVNKERVKGGIECGDVEMGKEETKKKKKKRRVKEMEWWESMEEEKFDGVVKRKRKTVRDWWKDECFEENEKKDKKKKKKRKGGDVKNNNIENGDDWWVSDDALDKRKGKSRSRNNRGNMDWWMDGLSGELWRGRRNNSFDSASGEIPKSGGVSSTPSMRGTVCYVAPECGYGGDVTEKSDVYSFGVLLLVIISGRRPLQVSGSPLSEFQRANLLSWARHCARNGKLLELVDESLQLLDKEQTLLCIKVALLCLQKSPIRRPSMKEVVGMLSGVLEPPQLPVEYSPSTPSRYPFKSRRKGRICLGFTVCISRLKSHAGNTSCKRKSEFEMVKFFEAEESLYKLFSCDCVNGCDSRTGAHLSKDTMFGKYDRVCKENSYIC* 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0925 739 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Vra1g0925 739 MobiDBLite consensus disorder prediction 431 451 - -
Vra1g0925 739 Pfam Protein kinase domain 85 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0925 739 ProSiteProfiles Protein kinase domain profile. 81 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0925 739 SUPERFAMILY Protein kinase-like (PK-like) 59 652 IPR011009 -
Vra1g0925 739 Gene3D Transferase(Phosphotransferase) domain 1 497 639 - -
Vra1g0925 739 Pfam Protein tyrosine and serine/threonine kinase 516 629 IPR001245 GO:0004672|GO:0006468
Vra1g0925 739 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 660 - -
Vra1g0925 739 PANTHER OS07G0586332 PROTEIN 1 660 IPR044576 -
Vra1g0925 739 Gene3D Transferase(Phosphotransferase) domain 1 67 248 - -
Vra1g0925 739 SMART serkin_6 81 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0925 Vra-Chr1 10767223 10770229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0925 508 630 Receptor kinase-like Gene Family AT3G58690 35.659 4.63e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Vra1g0925 Pkinase 5.9e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0925 - - gsj:114368603 1043.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0925 1 10767223 10770229 Vra1g0925 1 10767223 10770229 ECH
Vra1g0925 1 10767223 10770229 Vra8g2299 8 41249884 41252349 PCT