Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0921 ATGAATGGAACTGGAAAATTTGAACTAAAGCTTAGGCCTTTGATTCGGTGCAGTGCACTTCTGAAAATAATAGTGATAAGTTATTTTTTGGAAGATGACCTTGAATTAAGGTTGGGAAAGAGTATTGAGTCTTACGACAGCACTGAAACTGCTTCTTACTGCAATCCACTCAATGATGGTACCATAGTTGCATCTCCGCCACCGCCCTATCGTTGCCATGATTCCCCGCCGGTCGTCGACGATACTCCAAGTCACTCCACCCAACCTCCCTTGCTCCCGGCGAACGCCCACGCGGGTGAACCTGACGTTGGTCCCCATGTGTACAAGCAAGCTGTGATTTGGTACGATGAGTGTACCGTTCGTTACTCCAACAACTCATTCTTCTCCACTGTCTCCGTCAGACCTAGAGTTGGCCTGTTGACCACTGCTAATATCTCAAACCAGGAAAGTTTCATGAATTTATTGTTTCAGACCATCAACGAAACTGCAGATGCTGCTGCTGTTGATGTTCAGAAGTTTGCAACAGGGGAAGCAAAAATTTCTGGGTTTCAGAGCCTTTATTGTCTGGCTCAGTGTACTCGGGACCTGTCACCCAGTGATTGCAGAAGCTGTCTGAGTGGAGTGATAGGCGACCTTCCATGGTGCTGCCAAGGGAAGCAAGGAGGGAGAGTTCTGTACCCAAGCTGCAATGTTAGGTATGAGCGTTACCCTTTCTATGGCTCCACACCTGAAGATTCACAGTTATCAGAAGATCCAATTTACCTAAATCACATTTGCTCAACTAATGTAACTGCTGATAGCGATTTCAAAATACATCTGAGCACCCTTCTCTCTTACATGTCTTCCAATGCCACCAACCAAATGGATTACAAGGATGTTGTTGAGGACACTGTTTATGGCCTCTTCATGTGCCGAGGTGACCTTCCCTCTCCTCTCTGTCATCAGTGTGTCCTCAACGCAACCCTCATAATATCTTCAGAGTGTAATTCGTTTCAAGAGGCTGTAATTTGGTACAACTACTGCATGATTCGCTATTCCTATCGCCATTTCTTCTCCCAGGTTGAAAAGAGGCCACCTTTTCAGATGTTAAGTCTTATCAATACCTTCAACGATGTTCGAGAGCAAAGCTTCTTCACTTACACATTATCAACAACGTTGTATAATCTTTTTGAGGCAGCGAAGAGCAGTACAGAGAGATATGTGACTAAATCTTCACTAATTGATGACTCAGAAACCCTTTATGTTCTTGCTCAATGTACGCAGGATTTGTCTGGTGAGAATTGCAGCCTTTGCCTGGAAGATATAAATAAAAACATGCCATTCGCTCAACTGGGAAACACAGGGGGGAGAGTTCTGTATCCGAGTTGCAATCTCAGATATGAATTTTTCCAATTTTACAGGGATCCTACATGGCAGACGCCTGGTAATTCTTCTCCAACACTCCTAAAAGGTACACTCCACTCCTTAACATCTCGTTTAAACAGGAAAAAACAAAAGAAACAATTGCGAACAATTATCTCGATTGTTCTATCTATTATTGTTTCGGTGACGCTCTTTATCTTCGTCTACTATTTGATAAAGAGAAAAGCAAGAAAAAGTGTTAAGTCTATTCTTAGAGAAAATTTTGGTTATGAAAGTGTCACTTTAGAGCCATTGCAATTCAGTTTCTCAATAATTAAAGCAGCTACCAACAATTTTTCAAATGAGAATAGGATTGGAAAGGGAGGATTTGGAGAAGTTTACAAGGGTGTTCTTTTTGATGGACGACAAGTAGCTATAAAGAAGCTTTCAAAAAGTTCTAAACAAGGAGTGCATGAATTCAAGAATGAAGTTTTATTGATAGCCAAGCTCCAACATAGAAATCTTGTCACATTCATTGGCTTTTGTCTTGAAGAAGAACAAAAAATACTTATCTATGAATATGTGCCAAACAAGAGTCTTGACTATTTTTTATTTGATTCTCAAAAAGCACATTTGTTAAGTTGGTCACAACGTTATGAAATTATTACAGGAATTGCTCGAGGAATCCTTTATTTACATGAACATTCTCGACTTAAAGTTATACATCGTGATCTTAAGCCCAGTAATATTTTATTGGATGAGAATATGATTCCAAAAATTTCAGATTTTGGTCTTGCCAGAATTATTGAAATAAATCAAGATGAAGGGAGTACAGGGAGAATTGTTGGAACATATGGTTATATGTCTCCAGAATATGCTATGTATGGACAATTTTCAGAAAAATCAGATGTTTTTAGCTTTGGAGTCATGGTCATAGAGATTATTACTGGAAAAAAGAATTTCACTTCTTATGATCAACCACAAGAAGTTGCTAACAACCTTTTGAGTTATGCGTGGAGACAATGGAGGGATAAGACAATATTAAGCATATTAGACCCAAGTATTAAAGAAAAATATTCAGAAGAGGAAGTTTCTATATGCATTCAAATTGCTTTATTATGTGTGCAACAAAATCCTCATGCTAGACCATCAATGGTGAAGATTGTTTCATATTTTAGCAATCATTTAGTTGAATTGCCAAGACCAGAGGAACCCACATTTTTCTTGCAAGAATCAAGTCATGGACATTCTCCAAGCGGTTGCACTCCATTCTCAGTTAATGAAATGTCAATTAGTCAATTTCTTCCTCGATAG 2655 0.3932 MNGTGKFELKLRPLIRCSALLKIIVISYFLEDDLELRLGKSIESYDSTETASYCNPLNDGTIVASPPPPYRCHDSPPVVDDTPSHSTQPPLLPANAHAGEPDVGPHVYKQAVIWYDECTVRYSNNSFFSTVSVRPRVGLLTTANISNQESFMNLLFQTINETADAAAVDVQKFATGEAKISGFQSLYCLAQCTRDLSPSDCRSCLSGVIGDLPWCCQGKQGGRVLYPSCNVRYERYPFYGSTPEDSQLSEDPIYLNHICSTNVTADSDFKIHLSTLLSYMSSNATNQMDYKDVVEDTVYGLFMCRGDLPSPLCHQCVLNATLIISSECNSFQEAVIWYNYCMIRYSYRHFFSQVEKRPPFQMLSLINTFNDVREQSFFTYTLSTTLYNLFEAAKSSTERYVTKSSLIDDSETLYVLAQCTQDLSGENCSLCLEDINKNMPFAQLGNTGGRVLYPSCNLRYEFFQFYRDPTWQTPGNSSPTLLKGTLHSLTSRLNRKKQKKQLRTIISIVLSIIVSVTLFIFVYYLIKRKARKSVKSILRENFGYESVTLEPLQFSFSIIKAATNNFSNENRIGKGGFGEVYKGVLFDGRQVAIKKLSKSSKQGVHEFKNEVLLIAKLQHRNLVTFIGFCLEEEQKILIYEYVPNKSLDYFLFDSQKAHLLSWSQRYEIITGIARGILYLHEHSRLKVIHRDLKPSNILLDENMIPKISDFGLARIIEINQDEGSTGRIVGTYGYMSPEYAMYGQFSEKSDVFSFGVMVIEIITGKKNFTSYDQPQEVANNLLSYAWRQWRDKTILSILDPSIKEKYSEEEVSICIQIALLCVQQNPHARPSMVKIVSYFSNHLVELPRPEEPTFFLQESSHGHSPSGCTPFSVNEMSISQFLPR* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0921 884 SMART serkin_6 566 839 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0921 884 CDD STKc_IRAK 572 839 - -
Vra1g0921 884 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 112 243 - -
Vra1g0921 884 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 247 475 - -
Vra1g0921 884 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 492 862 - -
Vra1g0921 884 SUPERFAMILY Protein kinase-like (PK-like) 548 865 IPR011009 -
Vra1g0921 884 Gene3D Phosphorylase Kinase; domain 1 527 641 - -
Vra1g0921 884 ProSiteProfiles Gnk2-homologous domain profile. 251 350 IPR002902 -
Vra1g0921 884 ProSiteProfiles Gnk2-homologous domain profile. 360 465 IPR002902 -
Vra1g0921 884 ProSitePatterns Protein kinases ATP-binding region signature. 572 595 IPR017441 GO:0005524
Vra1g0921 884 Gene3D - 253 350 IPR038408 -
Vra1g0921 884 Gene3D - 137 238 IPR038408 -
Vra1g0921 884 Gene3D - 361 465 IPR038408 -
Vra1g0921 884 Pfam Protein kinase domain 567 837 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0921 884 ProSiteProfiles Protein kinase domain profile. 566 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0921 884 ProSitePatterns Serine/Threonine protein kinases active-site signature. 687 699 IPR008271 GO:0004672|GO:0006468
Vra1g0921 884 Gene3D Transferase(Phosphotransferase) domain 1 642 846 - -
Vra1g0921 884 ProSiteProfiles Gnk2-homologous domain profile. 133 238 IPR002902 -
Vra1g0921 884 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 492 862 - -
Vra1g0921 884 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 112 243 - -
Vra1g0921 884 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 247 475 - -
Vra1g0921 884 Pfam Salt stress response/antifungal 146 236 IPR002902 -
Vra1g0921 884 Pfam Salt stress response/antifungal 259 346 IPR002902 -
Vra1g0921 884 Pfam Salt stress response/antifungal 373 461 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0921 Vra-Chr1 10722253 10728498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0921 248 884 Receptor kinase-like Gene Family AT4G05200 42.296 4.32e-168 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra1g0921 Pkinase 3.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0921 - - gmx:100798426 1041.18