Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0920 ATGGCTTCATACAAGACTCTCATCTTCTTTATCCTTGTTAGCTTCCTCAACTTGGCAATCACAGAGCCACAACATTATACTCCACTCTACCAATATTGTTCCAGTGAACAAACCACCGACAATACCTCTCTCCAACTTAATGTCAAAATCCTCCTTAATAACCTGTCTTCTTTGTCCTCTGCCCACACGCAATACCACACCAATTTCTCATGTCTAAACCCCTCAGACTCTATCTATGGCTTGTTCATGTGTAGGGGTGACACTTCACCTCATGACTGTCAAAAATGCGTTCAAGGTGCAAAAAACAAACTATCCTCAGACTGTTCTCTGTCCAAAGAATCTGTCACTTGGTACGAACACTGCATGCTTCGCTATTCCACCAACTACTTCTTCTCCACCGTCGCCACAACCCAATGCAACACTGGCAAGGTCTTCTCAAACCCTGAAAGCTTCATGCAGTTATATTTTCTCACCATGAACCAAACAGCAGATGCAGCAGCACGTGCTCCTACGGTTAACAAAAATACCAAGATGTTTTCTACGAGGGAAGCACGCGTGTCTGATTCCCACAACCAGACCCTTTATTGTATGGCTCAATGCTCACCCGATCTATCACCCAATGATTGCAGAACCTGCCTCGGTGAAGCCATAAGAGATGTTCCAAACTCTCCACAATGTTCTGGGGTGAGACTTGGAGGAAAAGTTCTTTACCCCAGTTGTAACATTAGGTATGAATCTTATCCTTTTTATCTCGTTCCACCAACAAACCTTTCACCTCATCAGCTTCTTCCCGAAACAAAAACCTCTCATCTTGCAGATTTAACGTTTTCAAAAGACCCTCTTTATCTCTCTCACAATTGCTCCAGTAACAGAACCCTCGCTTCCAATAACACTTCACAGATAAGCCTCACCACCCTCTTTTCTTACCTATCTTCCAATGCCACCAAAAGGAAATATTACGAAGCTCATGTGAACAGCACAGTTTATGGCCTCTTCATGTGCCGAGCTGACGTTCCCTATGACTTGTGTGAAAAATGCGTCCAAAACGCAACACATCGAATAGCATTAGATTGCAACTCCCTCCAAGAGGGTATAGTTTGGTACAGCCAATGCATGGTTCGCTATTCCTACAGAAAATTTTTTAGAACAGTGGAGACAAGTCCTATGTTTTCGGAGCTGAATTTGACTCAAGGAAACGAGAAACAAAGTTGCTTCAGTGTTACATTAGCGAAGACGCTAGATAAGGTGGCAGTTATGGCAGGAGACAGTGATGAAAGATTTGGAAAATACTCAATGAAATTGAATGATCAACAAACCCTTTACACTCTTGCTCAATGCACGCATGATTTGCCTACTGACGATTGCAAGGGTTGCTTGGGAATTTTGATAGGAACAGAAATTCCATGGCCTTTTTTGGAAAGCACAGCGGGAAGGGTTCTATATCCTAGTTGCAATATCAGATTTGAATTTTCCCAGTTTTACTTCGACAAAGTTCCATCTGCAAGACCAGTTAATCTCGAATCAGGAAATAAAAGAATCAATGTACGAAGAATTATATTGATTACTGTGCCCACAATTATTTTGATGACGCTCATCTTCGTGGCTTTTTATTTTCAAAGGAGAAATACAAGAAAGAGCCATGCGACTATTCTCAAGGAAAATTTTGGTCATGAAACTGCCACTTTGGAGCCCTTACACTTCAATTTGACAGCAATTGAGTTAGCAACTAATAACTTTTCCAACGAGAACAAGATAGGAAAAGGTGGATTTGGAGAAGTTTATAAGGGTATTCTTCCTAGTGGACGGCCAATTGCGGTAAAAAGGCTCTCAAAAAGTTCAAAACAAGGTGTTGCTGAGTTCAAGACCGAAGTTTTATTAATTGCCAAACTTCAACATAGAAACTTAGTAGAATTCATTGGCTTTTGTCTTGAAGAAGAAGAAAAGATACTTATTTACGAATATGTGCCCAACAAGAGTCTTGATCACTTTTTATTTGATCCTCAACCACATAAATCATTAAGTTGGTGTGAAAGATATAAAATCATTGGAGGTATTGCACGAGGAATTGTTTATTTACATGAACATTCTCGACTTAAGATCATACATCGTGATCTTAAACCGAGTAATGTTCTACTTGATGAAAATATGACTCCAAAAATTTCAGATTTTGGCATTGCTAAAATTATCGAAATAAGTCAAGACCAAGAAAGCACAGATTTAATTGTCGGAACATGTGGTTATATGTCTCCAGAATATGCAATGTTTGGACAATTTTCAGAAAAATCAGATGTTTTTAGTTTTGGAGTAATGGTTTTAGAGATTATTACGGGAAGAAAAAATATATATTTCCCTGAACCACATCATATAGCTGACAGCCTCCTAAGTTATGTTTGGAAACAATGGAGGGCTCAAACACCATTAAGAACCTTGAACTCAGATATTAGAGAAAACTATGCAGAAATTGAAGTTATAAAGTGTATTCAGATTGGTCTATTATGTGTTCAAGAAAGTCCAGACATTAGACCAACAATGATAACAATTGTTTCATATCTTGATGGTCACTTTAGTGAATTGCCAACTCCACAAAGACCGGCGTTTTTCTTGCATGAAAGAATAGATTCCAAATCTATTGGGAGGAAATCTAGTTCTAGGAGATTCATGAATATTTCTAAGCCATTATCAATCAGTGAAATGTCTACAAGTGAATGTTTTCCTCGTTAA 2721 0.3892 MASYKTLIFFILVSFLNLAITEPQHYTPLYQYCSSEQTTDNTSLQLNVKILLNNLSSLSSAHTQYHTNFSCLNPSDSIYGLFMCRGDTSPHDCQKCVQGAKNKLSSDCSLSKESVTWYEHCMLRYSTNYFFSTVATTQCNTGKVFSNPESFMQLYFLTMNQTADAAARAPTVNKNTKMFSTREARVSDSHNQTLYCMAQCSPDLSPNDCRTCLGEAIRDVPNSPQCSGVRLGGKVLYPSCNIRYESYPFYLVPPTNLSPHQLLPETKTSHLADLTFSKDPLYLSHNCSSNRTLASNNTSQISLTTLFSYLSSNATKRKYYEAHVNSTVYGLFMCRADVPYDLCEKCVQNATHRIALDCNSLQEGIVWYSQCMVRYSYRKFFRTVETSPMFSELNLTQGNEKQSCFSVTLAKTLDKVAVMAGDSDERFGKYSMKLNDQQTLYTLAQCTHDLPTDDCKGCLGILIGTEIPWPFLESTAGRVLYPSCNIRFEFSQFYFDKVPSARPVNLESGNKRINVRRIILITVPTIILMTLIFVAFYFQRRNTRKSHATILKENFGHETATLEPLHFNLTAIELATNNFSNENKIGKGGFGEVYKGILPSGRPIAVKRLSKSSKQGVAEFKTEVLLIAKLQHRNLVEFIGFCLEEEEKILIYEYVPNKSLDHFLFDPQPHKSLSWCERYKIIGGIARGIVYLHEHSRLKIIHRDLKPSNVLLDENMTPKISDFGIAKIIEISQDQESTDLIVGTCGYMSPEYAMFGQFSEKSDVFSFGVMVLEIITGRKNIYFPEPHHIADSLLSYVWKQWRAQTPLRTLNSDIRENYAEIEVIKCIQIGLLCVQESPDIRPTMITIVSYLDGHFSELPTPQRPAFFLHERIDSKSIGRKSSSRRFMNISKPLSISEMSTSECFPR* 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0920 906 Pfam Salt stress response/antifungal 139 247 IPR002902 -
Vra1g0920 906 Pfam Salt stress response/antifungal 33 127 IPR002902 -
Vra1g0920 906 Pfam Salt stress response/antifungal 287 376 IPR002902 -
Vra1g0920 906 Pfam Salt stress response/antifungal 399 489 IPR002902 -
Vra1g0920 906 ProSiteProfiles Gnk2-homologous domain profile. 281 380 IPR002902 -
Vra1g0920 906 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 270 496 - -
Vra1g0920 906 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 509 894 - -
Vra1g0920 906 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 19 254 - -
Vra1g0920 906 Gene3D - 388 493 IPR038408 -
Vra1g0920 906 Gene3D - 280 380 IPR038408 -
Vra1g0920 906 Gene3D - 132 249 IPR038408 -
Vra1g0920 906 Gene3D - 26 130 IPR038408 -
Vra1g0920 906 ProSiteProfiles Gnk2-homologous domain profile. 386 493 IPR002902 -
Vra1g0920 906 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 509 894 - -
Vra1g0920 906 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 254 - -
Vra1g0920 906 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 270 496 - -
Vra1g0920 906 ProSitePatterns Serine/Threonine protein kinases active-site signature. 700 712 IPR008271 GO:0004672|GO:0006468
Vra1g0920 906 ProSiteProfiles Protein kinase domain profile. 579 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0920 906 PIRSF SRK 73 217 IPR024171 GO:0004674
Vra1g0920 906 PIRSF SRK 480 901 IPR024171 GO:0004674
Vra1g0920 906 SUPERFAMILY Protein kinase-like (PK-like) 563 870 IPR011009 -
Vra1g0920 906 Gene3D Transferase(Phosphotransferase) domain 1 655 859 - -
Vra1g0920 906 Pfam Protein kinase domain 580 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0920 906 ProSitePatterns Protein kinases ATP-binding region signature. 585 607 IPR017441 GO:0005524
Vra1g0920 906 ProSiteProfiles Gnk2-homologous domain profile. 132 249 IPR002902 -
Vra1g0920 906 Gene3D Phosphorylase Kinase; domain 1 539 654 - -
Vra1g0920 906 SMART serkin_6 579 851 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0920 906 CDD STKc_IRAK 585 853 - -
Vra1g0920 906 ProSiteProfiles Gnk2-homologous domain profile. 26 130 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0920 Vra-Chr1 10705287 10708835 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0920 275 906 Receptor kinase-like Gene Family AT4G05200 42.792 4.61e-166 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra1g0920 Pkinase 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0920 - - gmx:100807113 1054.28