Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0913 ATGAAAGGTGTCTTGTCTTTTCTTCCCGAGTTCAGAAACCACTCTCTGTTGCTTCTCCTGGCAATGGAGCTCCTGCTGCTTCTTCTCTCTCACTTTGCGTCTCCTCTCAGTGGTGAAGGACAAGCATTGATGAAGATTAAGGCTTCATTCAGCAATGTAGCAGATGTTCTGCATGATTGGGATGATTTGCATAGTGACGACTTCTGCTCCTGGAGCGGAGTCTTGTGTGACAATGTCAGCCTTACTGTTCTCTCTCTAAACTTGTCAAGCTTGAACCTTGGTGGGGAGATATCACCGGCCATTGGTGACTTAAGAAACTTGCAATCGATAGACCTGCAGGGGAATAAACTCACTGGTCAAATTCCAGATGAAATTGGGAACTGTGCTGCACTTATTCATCTGGATTTGTCTGATAATCTGTTATATGGTGATATACCTTTCTCCATATCAAAACTGAAGCAGCTTGTGTTTCTGAATTTAAAGAGTAATCAGTTGACTGGTCCTATCCCTTCAACTTTAACCCAAATTCCTAACTTGAAGACTCTCGATCTTGCACGAAATAGACTCACTGGTGAGATTCCAAGGCTACTCTACTGGAATGAAGTCCTGCAATACCTTGGGTTGCGAGGGAACATGTTGAGTGGAACTCTGTCCCCTGATATCTGTCAATTAACTGGTTTGTGGTATTTTGATGTGAGAGGCAATAATTTGACTGGCACCATACCTGACAGCATTGGAAACTGCACAAATTTTGAAATCCTGGATCTGTCATATAACCAGATATCTGGGGAGATTCCCTATAATATCGGATTTCTTCAAGTAGCTACTTTGTCACTTCAAGGAAATAGACTAACTGGAAAGATTCCGGAAGTCATTGGTTTAATGCAAGCCCTTGCCATTTTGGATTTGAGTGAGAATGAGCTCATAGGACCCATTCCTCCCATACTAGGCAATCTGTCTTTTACTGGCAAGCTGTACCTTCATGGAAACATGATCACTGGACCAATACCTCCAGAACTTGGCAATATGTCAAGACTAAGCTACCTGCAATTGAATGACAATAAAATAGTTGGCCAAATTCCGGATGAACTTGGGAAGCTCGAGCACTTGTTTGAATTGAATCTTGCCAATAATCATCTTGAGGGATCTATTCCACTTAACATTAGCTCCTGTACGGCCTTGAATAAGTTTAATGTGCATGGAAATCATTTAAGTGGTTCAATTCCTTTGAGCTTTAGCAGCCTCCAGAGCTTGACTTACTTAAACCTTTCGGCAAACAATTTCAATGGGAGTATACCTGTTGAATTAGGCCACATAATAAATCTTGATACGTTAGATCTATCTAGCAATAATTTTTCAGGGCATGTTCCGGGGTCTGTTGGTTATCTTGAGCATCTTCTAACTTTGAACTTAAGCCATAATAGTCTTCAGGGTCCCTTGCCTGCTGAATTTGGGAATCTTAGAAGCATACAAATTATCGATATCTCATTCAATCATCTGTTCGGTAGTATGCCTCCAGAAATTGGTCAGCTGCAGAATCTTGTGTCTCTGATTTTAAACAACAATGATTTGCGTGGGAAGATTCCAGACCAGCTTACAAATTGCTTAAGTCTTAACTTCCTGAATGTCTCATATAATAACTTATCCGGGGTCATTCCTCTAATGAAGAACTTCTCCCGGTTTTCAGCTGACAGCTTCATTGGAAATCCATTGTTATGCGGAAATTGGTTAGGATCCATATGTGATCCTTACATACCAAAATCCAGAGTGGTTTTCTCAAGGGCTGCAGTTGTTTGTCTCATAGTTGGTACCATCATATTATTGGCTATGGTAACTGTTGCTCTATACAGATCAAGCCAATCCATGGAATTGATTAAAGGACCTAGGGGAACTGAACAAGGGCCACCCAAACTTGTAATTCTTCATATGGGCTTGGCCATCCACACCTTTGATGATATCATGAGAGTTACTGAGAATCTCAGTGAGAAGTATATTGTAGGATATGGTGCCTCAGGTACCGTGTACAAGTGTGTTTTGAAGAATTCTCGGCCAATTGCAATTAAACGACTATACAATCGGCATCAACACAACTCAAGGGAGTTCGAGACAGAACTTGAAACTATTGGCAGCATCAGACACAGGAATCTTGTCACTTTGCATGGTTATGCTCTAACTCCTAATGGAAATCTTCTCTTCTATGACTATATGGAGAATGGCTCTCTGTGGGATCTTCTACATGGTCCCTTGAAAAAGGTAAAACATGATTGGGAAGCACGCTTGAGGATTGCTGTGGGAGCTTCTGAAGGACTTGCTTACCTCCATCATGACTGCAATCCTAGAATTATTCACAGGGATGTTAAGTCCTCAAATATCCTGATAGATGAGAACTTTGAAGCACGTCTCTCTGATTTTGGCATTGCCAAATGTTTGTCAACTACAAGAACACATGCATCAACATCTGTGGTTGGGACAATAGGCTATATTGACCCTGAGTATGCCAGGAGTTCTAGGTTGAATGAAAAATCTGACGTGTATAGCTTTGGTATTGTTCTACTTGAGCTACTCACAGGGAAGAAAGCAGTGGACAACGATTCCAACTTGCATCACTTGATATTATCTAAGGCAGATAACAACACTATAATGGAGACTGTGGATCCTGAGGTGTCTATTACCTGCATGGATCTGACCCATGTTAAGAAGACCTTTCAGCTTGCTCTTCTTTGCACAAAAGGAAACCCTTCTGAGAGGCCAACTATGCATGAGGTTGCCAGGGTTTTGGCATCACTACTCCCAGCACCTCCCAGCAACATCTTTGCCCCTCCTTCAAAGGCCATTGATTATGCACAATTTGTGATTCAAAAGGGAAACAACATCCATCCCCCACAGATGGAAAGGTTACAATCTCAGAAATGCTCTAATGATCAATGGTTTGTTCGCTTTGAGAATGTTGTATCAAATAACAGCTTATAG 2970 0.4152 MKGVLSFLPEFRNHSLLLLLAMELLLLLLSHFASPLSGEGQALMKIKASFSNVADVLHDWDDLHSDDFCSWSGVLCDNVSLTVLSLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLTGQIPDEIGNCAALIHLDLSDNLLYGDIPFSISKLKQLVFLNLKSNQLTGPIPSTLTQIPNLKTLDLARNRLTGEIPRLLYWNEVLQYLGLRGNMLSGTLSPDICQLTGLWYFDVRGNNLTGTIPDSIGNCTNFEILDLSYNQISGEIPYNIGFLQVATLSLQGNRLTGKIPEVIGLMQALAILDLSENELIGPIPPILGNLSFTGKLYLHGNMITGPIPPELGNMSRLSYLQLNDNKIVGQIPDELGKLEHLFELNLANNHLEGSIPLNISSCTALNKFNVHGNHLSGSIPLSFSSLQSLTYLNLSANNFNGSIPVELGHIINLDTLDLSSNNFSGHVPGSVGYLEHLLTLNLSHNSLQGPLPAEFGNLRSIQIIDISFNHLFGSMPPEIGQLQNLVSLILNNNDLRGKIPDQLTNCLSLNFLNVSYNNLSGVIPLMKNFSRFSADSFIGNPLLCGNWLGSICDPYIPKSRVVFSRAAVVCLIVGTIILLAMVTVALYRSSQSMELIKGPRGTEQGPPKLVILHMGLAIHTFDDIMRVTENLSEKYIVGYGASGTVYKCVLKNSRPIAIKRLYNRHQHNSREFETELETIGSIRHRNLVTLHGYALTPNGNLLFYDYMENGSLWDLLHGPLKKVKHDWEARLRIAVGASEGLAYLHHDCNPRIIHRDVKSSNILIDENFEARLSDFGIAKCLSTTRTHASTSVVGTIGYIDPEYARSSRLNEKSDVYSFGIVLLELLTGKKAVDNDSNLHHLILSKADNNTIMETVDPEVSITCMDLTHVKKTFQLALLCTKGNPSERPTMHEVARVLASLLPAPPSNIFAPPSKAIDYAQFVIQKGNNIHPPQMERLQSQKCSNDQWFVRFENVVSNNSL* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0913 989 ProSitePatterns Protein kinases ATP-binding region signature. 666 688 IPR017441 GO:0005524
Vra1g0913 989 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERL1-RELATED 27 958 - -
Vra1g0913 989 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 27 958 - -
Vra1g0913 989 SUPERFAMILY Protein kinase-like (PK-like) 639 926 IPR011009 -
Vra1g0913 989 ProSitePatterns Serine/Threonine protein kinases active-site signature. 781 793 IPR008271 GO:0004672|GO:0006468
Vra1g0913 989 SUPERFAMILY RNI-like 241 560 - -
Vra1g0913 989 Gene3D Ribonuclease Inhibitor 37 200 IPR032675 -
Vra1g0913 989 ProSiteProfiles Leucine-rich repeat profile. 178 200 IPR001611 GO:0005515
Vra1g0913 989 Gene3D Ribonuclease Inhibitor 201 274 IPR032675 -
Vra1g0913 989 Pfam Protein kinase domain 663 923 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0913 989 SMART serkin_6 660 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0913 989 Gene3D Phosphorylase Kinase; domain 1 631 735 - -
Vra1g0913 989 Gene3D Ribonuclease Inhibitor 275 584 IPR032675 -
Vra1g0913 989 SUPERFAMILY L domain-like 38 333 - -
Vra1g0913 989 Pfam Leucine rich repeat N-terminal domain 38 77 IPR013210 -
Vra1g0913 989 SMART LRR_typ_2 511 535 IPR003591 -
Vra1g0913 989 SMART LRR_typ_2 463 486 IPR003591 -
Vra1g0913 989 SMART LRR_typ_2 415 439 IPR003591 -
Vra1g0913 989 SMART LRR_typ_2 224 248 IPR003591 -
Vra1g0913 989 SMART LRR_typ_2 367 391 IPR003591 -
Vra1g0913 989 SMART LRR_typ_2 104 128 IPR003591 -
Vra1g0913 989 SMART LRR_typ_2 176 200 IPR003591 -
Vra1g0913 989 ProSiteProfiles Protein kinase domain profile. 660 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0913 989 Gene3D Transferase(Phosphotransferase) domain 1 736 934 - -
Vra1g0913 989 Pfam Leucine Rich repeat 247 264 IPR001611 GO:0005515
Vra1g0913 989 Pfam Leucine Rich repeat 177 192 IPR001611 GO:0005515
Vra1g0913 989 Pfam Leucine rich repeat 441 500 IPR001611 GO:0005515
Vra1g0913 989 Pfam Leucine rich repeat 105 165 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0913 Vra-Chr1 10632095 10639744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0913 106 989 Receptor kinase-like Gene Family AT5G07180 75.000 0.0 1329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Vra1g0913 Pkinase 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0913 K20718 - gmx:100305433 1749.56