Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0905 ATGGAGGAAAAAGAGATTTTTAGTTCTGGGCAGGCTGTTAAGGTTGTCGAGCCCCCCCAGAGCTTCCACGTGGCACTAAGCTCCGTGCAGTTTTCTGGGCCCACGGGGGATTCGCCGGCACCGGTGAGTGCTCCGGTGGTTACTTCCGGTAGTACAGAGGGGAAGAAGAAGAGGGGCCGGCCTAGGAAATATGGACCGGACGGCAATGTGGCGCTGTCGCCGATGCCGATATCATCGTCGATTCCATTGACCGGAGACTTCTCAGCCTGGAAAAGGGGCAGAGGAAAGCCAGTTGAATCAATCAAGAAGTCTTTTAAGTTTTATGAAGTTGAAGGTCAAGGTGCAGGACAAGGTGATCAAATTGCATACTCAGTTGGTGCCAATTTCACACCTCACATCCTTATAGTAAATGCTGGCGAGGATGTTACTATGAAGATTATGTCCTTCTCTCAACAAGGATGTCAAGCGATTTGCATTCTGTCTGCAAATGGCACAATTTCAAATGTTACACTACGCCAACCAACCTCTTCTGGTGGTACTTTAACATATGAGGGGCGCTTTGAAATTCTTTCCTTGACTGGTTCATATATGCCAACTGAGAATGGGTTTACAAAGAGCAGATCTGGTGGAATGAGCATCTCGTTGGCCGGTCCAGATGGTCGAGTAATGGGGGGTGGACTGGCCGGTTTGCTGGTAGCTGCCGGTCCTGTGCAGGTTGTTGTGGCTAGTTTTGTTCCTGGTCACCAGCTGGAACAAAAACCAAAGAAGCCAAGGGTGGAGCATGTTCCATTGACTGCACCTATACATGTGAGCCCTACTTCTGCAGAAGATATAACTATTGGTCTTGGTGGAGTAAAGCCAATCTTGACACCAGCTGCTTTTCAAATGGACAGCATCTTTGGCAATGGACAACCTTCTGATGATGAGGCTCCTTTCCCTGAAGACGAAGAAGAAGAGCCTAACACAAGCTATGCAGATGCTGAAGTTGCTAGCTAA 996 0.4859 MEEKEIFSSGQAVKVVEPPQSFHVALSSVQFSGPTGDSPAPVSAPVVTSGSTEGKKKRGRPRKYGPDGNVALSPMPISSSIPLTGDFSAWKRGRGKPVESIKKSFKFYEVEGQGAGQGDQIAYSVGANFTPHILIVNAGEDVTMKIMSFSQQGCQAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLTGSYMPTENGFTKSRSGGMSISLAGPDGRVMGGGLAGLLVAAGPVQVVVASFVPGHQLEQKPKKPRVEHVPLTAPIHVSPTSAEDITIGLGGVKPILTPAAFQMDSIFGNGQPSDDEAPFPEDEEEEPNTSYADAEVAS* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0905 331 Gene3D - 131 261 - -
Vra1g0905 331 MobiDBLite consensus disorder prediction 29 69 - -
Vra1g0905 331 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 7 310 - -
Vra1g0905 331 SUPERFAMILY AF0104/ALDC/Ptd012-like 128 252 - -
Vra1g0905 331 MobiDBLite consensus disorder prediction 309 323 - -
Vra1g0905 331 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 245 IPR005175 -
Vra1g0905 331 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 7 310 IPR039605 GO:0003680
Vra1g0905 331 MobiDBLite consensus disorder prediction 29 50 - -
Vra1g0905 331 ProSiteProfiles PPC domain profile profile. 126 267 IPR005175 -
Vra1g0905 331 MobiDBLite consensus disorder prediction 297 331 - -
Vra1g0905 331 CDD DUF296 130 244 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0905 Vra-Chr1 10546658 10552781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0905 38 271 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 59.756 2.86e-87 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0905 - - gmx:102667678 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1713 8 34283328 34290272 Vra1g0905 1 10546658 10552781 ECH
Vra1g0905 1 10546658 10552781 Vra1g0905 1 10546658 10552781 ECH
Vra1g0905 1 10546658 10552781 Vra8g1713 8 34283328 34290272 PCT