Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0896 ATGGTTTGTTCAGTGCATCTGCTTCCACTTCTCTTCCTCTTCCTCCTGGCTTTGCTCTTGAATCCGACATGTGTCTGTGGCAATGACGAGCTTAGAGCTCTGATGGACCTGAAATCCAGTTTGGATCCAGAGGGGCGGTTTCTGTCATCATGGACCATCGATGGCAGCCCCTGTGGTGGTTACTTTGAGGGAGTCGCTTGCAATGAGAAGGGTCAGGTGGCAAATGTTTCTCTGCAGGGGAAAGGGCTCTCTGGGAGGCTTTCACCGGCCATCGGTGGACTAAAGCACTTGACAGGACTCTACTTGCATTACAATTCTTTGTCTGGGGAGATTCCAAGGAAAGTTGCAAACTTGACTGAGCTCAGTGACTTGTACCTGAATGTGAATCATTTTTCTGGTGAAATCCCACCTGAGATTGGCAAGATGGAGAAGCTTCAAGTTTTGCAGCTCTGTTATAATCAGTTAACAGGAAGCATACCTACACAGCTTGGCGATTTGAAAAAGCTCAGTGTTCTTGCTCTTCAGTCAAACCAGTTGGCTGGAGCTATCCCTGCTACCCTAGGAGATTTGGAAATGTTGACGAGGCTAGATTTGAGTTCTAATAATCTCTTTGGTTCCATTCCCACTAAACTAGCCAATCTTCCTTCACTGCAAGTTCTGGATGTTCACAACAACACTCTCTCTGGGAATGTACCTACTGCTTTGAAGAGACTAGAGAATGGATTTGTGTATGAAAACAATGTGGGGTTATGTGGAGTTGGGTTTTCATCCTTGAAAGCTTGCACTGCTTCAAATAATGTTAATCTCACACGACCTGAACCTTATGGAGCAGGAGTTGGAAGTATCTCTAGAGATATCCCAGAAACTGCTAATGTAAAGTTGCCTTGCAATACAACTCGTTGCCAAAATCCATCTAAATCCAAACAAGCCACATCTATCACAGTTGGCATTGTTCTAGTAACAATTGCAGTATCAGCAATTGGTGTTTTGACCTTCACCGTATATAGGCGGCGGAAACAAAAGCTTGGAAGTGCCTTTGATACTTCTGAAGGCCGAGTAAGTACAGATCAAGCCAAGAGTATATACAGGAAAAATGGATCTCCTTTGGTTAGCCTTGAGTATTCTAATGGGTGGGACCCTTTGGCTGATAGCAGGAATTTCAACGGGGATAAGCAAGATTTGTTCCAGAGTTTCAGGTTCAACTTGGAAGAAGTGGAGTCAGCTACTCAGTATTTCTCAGAGTTGAATCTGTTGGGGAAGAGCAACTTTAGTGCTACATATAAAGGGGTTTTGAGAGATGGATCTGCTGTTGCTATCAAGAGCATCAGTAAAACTAGTTGCAAATCAGATGAAGCTGAGTTTTTGAAGGGATTGAACATTTTGACCTCACTGAGAAATGAGCATTTAGTGAGGTTGAGAGGATTTTGTTGTTCAAGGGGACGAGGGGAATGCTTTCTGGTCTATGATTTTGTTCCTAATGGAAATCTTACACGCTACCTTGATGTGAAGGAAGGTGATGGAGAAGTTCTTGAATGGTCAACTAGAGTTTCTATTGTGAAAGGAATTGCTAAAGGTATAGCATATTTACATGCACACAAATCAAACAAACCAGCCCTTGTTCACCAAAACATCTCAGCTGAGAAAGTGCTACTCGATCGGCGGTACAACCCAATGCTTTCAGATTCCGGCTTGTACAAGCTTCTCACCAATGACATTGTCTTCTCTGCACTAAAGGGTAGTGCAGCAAAGGGATACTTGGCTCCAGAATACACCACAACCGGCCGGTTCACGGAGAAAAGTGATGTTTATGCATTTGGAGTGCTTCTTTTCCAGATTATCACAGGGAAACAGAAGATCACAAGTGCAATGCGCCTTGCAGCAGAGTCCTTTACATTCCAAGAATTTATTGACCCGAACTTGCGTGGCAAGTTCTTTGAATACGAGGCAGCTAAACTAGCCAAGATGGCTTTACTTTGCTCCCATGAATCTCAGTTTGAGAGGCCAAGCATGGAAGCCATTGTTCAAGAACTGGGGAATTGTAGTAGCTGTCTTTGA 2055 0.438 MVCSVHLLPLLFLFLLALLLNPTCVCGNDELRALMDLKSSLDPEGRFLSSWTIDGSPCGGYFEGVACNEKGQVANVSLQGKGLSGRLSPAIGGLKHLTGLYLHYNSLSGEIPRKVANLTELSDLYLNVNHFSGEIPPEIGKMEKLQVLQLCYNQLTGSIPTQLGDLKKLSVLALQSNQLAGAIPATLGDLEMLTRLDLSSNNLFGSIPTKLANLPSLQVLDVHNNTLSGNVPTALKRLENGFVYENNVGLCGVGFSSLKACTASNNVNLTRPEPYGAGVGSISRDIPETANVKLPCNTTRCQNPSKSKQATSITVGIVLVTIAVSAIGVLTFTVYRRRKQKLGSAFDTSEGRVSTDQAKSIYRKNGSPLVSLEYSNGWDPLADSRNFNGDKQDLFQSFRFNLEEVESATQYFSELNLLGKSNFSATYKGVLRDGSAVAIKSISKTSCKSDEAEFLKGLNILTSLRNEHLVRLRGFCCSRGRGECFLVYDFVPNGNLTRYLDVKEGDGEVLEWSTRVSIVKGIAKGIAYLHAHKSNKPALVHQNISAEKVLLDRRYNPMLSDSGLYKLLTNDIVFSALKGSAAKGYLAPEYTTTGRFTEKSDVYAFGVLLFQIITGKQKITSAMRLAAESFTFQEFIDPNLRGKFFEYEAAKLAKMALLCSHESQFERPSMEAIVQELGNCSSCL* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0896 684 Gene3D Phosphorylase Kinase; domain 1 383 490 - -
Vra1g0896 684 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Vra1g0896 684 ProSiteProfiles Protein kinase domain profile. 412 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0896 684 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 7 682 - -
Vra1g0896 684 Pfam Protein tyrosine and serine/threonine kinase 416 677 IPR001245 GO:0004672|GO:0006468
Vra1g0896 684 SUPERFAMILY Protein kinase-like (PK-like) 391 677 IPR011009 -
Vra1g0896 684 Gene3D Ribonuclease Inhibitor 144 254 IPR032675 -
Vra1g0896 684 Gene3D Ribonuclease Inhibitor 29 141 IPR032675 -
Vra1g0896 684 Pfam Leucine rich repeat 169 227 IPR001611 GO:0005515
Vra1g0896 684 Gene3D Transferase(Phosphotransferase) domain 1 491 683 - -
Vra1g0896 684 SUPERFAMILY L domain-like 24 239 - -
Vra1g0896 684 CDD TM_EGFR-like 311 341 - -
Vra1g0896 684 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 7 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0896 Vra-Chr1 10404715 10408621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0896 5 525 Miscellaneous Gene Families AT4G22730 56.098 0.0 581
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vra1g0896 PK_Tyr_Ser-Thr 2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0896 - - gmx:100789253 1225.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0896 1 10404715 10408621 Vra8g1709 8 34239657 34243013 PCT