Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0895 ATGGCTTCCCTTGCAGCTTCCACTGCTGCTGCATCCCTTGGCATGTCAGAAATGCTTGGAAACCCCATCAACCTCAGTGGTGCCACAAGGCCTGCTCCATCTCCCTCTAGCCCTGCCTCCTTCAAAACTGTGGCTCTTTTCTCCAAAAAGAAGGCAGCACCACCTCCCCCCAAAAAACCTGCTGCTGTTTCTCCTGCCAATGATGAACTTGCCAAGTGGTATGGTCCTGACAGAAGGATCTTCTTGCCAGATGGTCTCTTGGACCGATCTGAGATCCCGGAGTACTTGACTGGAGAAGTCCCCGGAGATTATGGTTATGACCCTTTTGGTCTCAGCAAGAAGCCAGAGGACTTTGCCAAATATCAGGCATTTGAGTTGATTCACGCCAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCTGAGGCCTTCAACAAATATGGAGCAAACTGTGGTCCTGAGGCTGTTTGGTTCAAGACAGGAGCTCTGCTTCTTGATGGGGGTACGTTGAACTACTTTGGGAAGCCCATTCCCATCAATCTTATTGTGGCTGTCATTGCTGAGATAGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGAATTTCGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGACTTGCAAATGATCCAGATCAGGCTGCACTGCTAAAGGTGAAGGAAATCAAGAATGGTAGACTTGCTATGTTTGCCATGCTTGGTTTCTACTTCCAAGCCTATGTGACTGGAGAAGGCCCTGTTGAGAACCTTGCAAAGCATCTCAGCGACCCTTTTGGCAACAACTTGCTCACAGTCATTGCTGGAAATGCTGAAAGAGCTCCAACTCTCTAA 876 0.4852 MASLAASTAAASLGMSEMLGNPINLSGATRPAPSPSSPASFKTVALFSKKKAAPPPPKKPAAVSPANDELAKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGNAERAPTL* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0895 291 SUPERFAMILY Chlorophyll a-b binding protein 73 281 - -
Vra1g0895 291 MobiDBLite consensus disorder prediction 27 41 - -
Vra1g0895 291 Pfam Chlorophyll A-B binding protein 93 254 IPR022796 -
Vra1g0895 291 Gene3D Chlorophyll a/b binding protein domain 80 291 - -
Vra1g0895 291 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 291 IPR001344 GO:0009765|GO:0016020
Vra1g0895 291 MobiDBLite consensus disorder prediction 22 41 - -
Vra1g0895 291 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0895 Vra-Chr1 10386937 10389503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0895 11 291 Chloroplast and Mitochondria Gene Families AT4G10340 82.979 4.76e-154 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0895 K08916 - gmx:100806585 532.717