Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0891 ATGGCTGTAAGATCACAGTCCCAAGAATTCACCTACGATGTCTTCCTCAACTTCAGAGGCTCAGACACACGCTATGGTTTTGCTGGCAATCTCTACAAAGCTCTTGATGACAGGGGAATCCACACTTTCATTGATGATGAGAAGCTTCAGGGTGGAGATGAACTAGCACCAGCACTTGTCAAGGCAATTCAAGAGTCCAGGATTGCCATCACTGTGCTTTCTCACACCTATGCTTCTTCTTCATTTTGTTTAGATGAACTGGTTTACATCCTTGACCGTGCTGAGGAAAAAAAGTTGCTGGTTTTGCCAGTTTTTTATAACGTGGATCCTTCTTTTGTGAGGCACCAAAAAGGAAGTTATGGTGAAGCATTGGCTAGGCATGAGGAAAGGCTCAAAGCTGATAATATTGAGAGGTTAAACCGTCACATGGAGAAGTTGGAGAAATGGAAGATGGCTCTTCATCAAGTAGCTAACTTGTCTGGCTTTCATTACAAATATGGAGAAGGATATGAATACAAGTTTATTGGGAGGATTGTTGAGCGGGTCTCTAGTGAGATTAATCGTGCTCCTTTACATGTGGCGGATTACCCGGTTGGATTAGACTCACAAGTGTTAAAAGTAATGAATCTTTTGGATGTAGGATCTAATGATGGTGTCCACTTGATAGGGATCTATGGAATGGGAGGAGTGGGGAAAACGTCACTTTCTTCAGCAGTTTATAATTTGATTGCTTGCCATTTTGATGGTTCCTGTTTTCTTCAAAATGTGAGAGAAAAATCACGCAAACACGGGTTAGAACATCTTCAAAGCATCATTCTTTCCGAAATACTTGGAGATAAGAGAATTATGTTTGCAAGTGAGCAACAAGGAATTTCAAGGATACAACACAGGCTCCAAAACAAGAGGCTTCTTTTGATTCTAGATGATGTGGACAAGCATGAGCAGTTGCAGACACTTGTTGGAAGGCCTGACTGTTTTGGTCCTGGAAGCAAAGTCGTCATCACCACTCGGGACAAACAACTGCTGGCATCTCATCATGTTCAAAAAACATATAAGGTGAAAAAGTTAAATAAGAACCATGCTCTTCAATTGCTTACATGGAAAGTTTTCAAATCAGAACATGTTTATCCAGCATACGTGGAGGTGCTTAATCGTGCAGTAACTTATGCTTGTGGCCTTCCATTAGCTTTGGAAGTAATAGGTGCCAACCTGTGTGGAAAAAGTATACAACAATGCATATCTGTCATAGATCAATACAAAAGAATTCCAAACAATCGAATCCAAGAGACTCTTAAAGTAAGCTTTGATGCGTTGCAGGAAGAAGAGAAGAGAGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATATAAATTAACAGAAGTTGAAGAAATACTTCATGCTCATCATGGTGCTTGTATGAAATATCATATTGGCGTGTTGGCTGAAAAATCTCTCATAAAGATTGGTCAGTATGATAGAGTTACATTGCATGACTTGGTAGAGGACATGGGCAAGGAAATTGTCAGACAAGAATCAGCAGAAGAACCAGGGAAGCGCAGTAGGTTATGGTTACCGAAAGATATAATCCAAGTTTTGGAAGACAACACTGGAACAAGTGAAATTAAAATCATATGTCTGGATTTCCCCTTGTTTGAAAACAAAATGGTAGAATGGAATGGGATGGCTTTCCAGAAGATGCAAAACCTCAAAACACTTATTATTAGAAATGGAATTTTTTCTGATGATCCCAAATGTTTTCCAAATAGTTTGAGAGTGTTGGAATGGTGGAGATATCCTTCACATTGTTTACCATCTAATTTTCAACCAAAACAACTTGCAATATGCAAGTTACCCCATAGTCTCTTTATGTCATTTGAGATGGATGGATTAAGCAAGAAGCTCAGGAATCTACGGGTTTTGAATTTTGAATGCTGTGAATGTTTAACTCAGATACCCGAAGCCGTATCTGATCTCCAAAATTTGGAGGAACTTTCATTTCAAAATTGTGTAAATTTAGTTAGAGTTCATAATTCGGTTGGTTTGCTGGAGAAACTTAGGATATTGGAAGCTTCTGGTTGCATCAAGCTTAGGAATTTTCCACCCCTGAAGTTGACTTCTCTTGAAAAACTTGAACTTTCACATTGTTCTAGTCTTGAGAGTTTTCCAGAAATTATAGGAAAGATGGAAAACATAAGGGAACTTCGGTTGCTAGGAACTTTCATAAAAGAGTTGCCACTTTCATTTAAAAATCTAACTCGGCTTAAAAAGTTGTCCCTGCTATTCTGTGGAATTGTTCAGTTACAAAGCAGCATTGTCATGATGCCAGAACTGACTTTTATTGAGGCTTGGGGATGGAAAGGGTGGCAGTGGATAAAGTGGGAAGAGGACGAAGAAAAAGATGGCTCAATGATATCTTCAAAAGTAGAATTGCTTTGGGCGCCAAAATGCAACCTGCGTGATGATTTTTTTCAAATAGGTTTCACACGGTTTGCTCATGTTAAAGATTTAGACCTATCGAACAATAATTTCACACACCTTCCTGAATGCATCAAAGAATGTCAATTTTTAAAAAAGCTTGACGTGAGTTGTTGCAATCATCTTCGGGAAATCAGAGGAATCCCACCAAAGTTGAAACATTTCAACGCAACAAACTGTTTATCGCTGACATCCTCGAGTATAAGCATGTTCCTAAACCAGGATCTGCATGCGAATAGAAAAACTATGTTAGTTTTGCCAGGATCTTGGAAACCCGAATGGTTTGATCACATAAGTTATGGACCTTCATGTTCTTTCTGGATTCGCAACAAATTCCCTGGCAAAGTTCTTTGTCATTTTGTTGCACCGGAGGATAGAGACATTAGAGATTATGTTAAACCCATGTTGTGCATCAATGACAAAGTTTATTTATGTTTCTTTGATAGGCTCAAGTTCTTGAAGTTGGGAGCAGAACACACATTTCTTTTCGATCTACGAAATTTAATCTTCACCAACAATCTGTATGAAGTGCCTTTACAGAATGAATGGAACCCTGTGAAGGTTATATTTTTTAATTTGAAAGCAGCCTCAATGCCTACACAAGTGCCTATACAAATTGGAATCCATGTATTCAAGCGGGAAAGTAGCAATGAAGATATTATGTTCACTAATCCTTATACAAAGAAGAGGAAGCTAGAAAAGATCCTAACTGGTTTTCCCAATACATCCAACTACATTTTGGACTTTGATCTTTCTGGTTACTGGTTTTCCCAATACATGCAAGCCTTTCACCAAGACCAAATTTTGAATAATGGCAAAATTAAGCTTCTGACGGGGTGA 3315 0.3864 MAVRSQSQEFTYDVFLNFRGSDTRYGFAGNLYKALDDRGIHTFIDDEKLQGGDELAPALVKAIQESRIAITVLSHTYASSSFCLDELVYILDRAEEKKLLVLPVFYNVDPSFVRHQKGSYGEALARHEERLKADNIERLNRHMEKLEKWKMALHQVANLSGFHYKYGEGYEYKFIGRIVERVSSEINRAPLHVADYPVGLDSQVLKVMNLLDVGSNDGVHLIGIYGMGGVGKTSLSSAVYNLIACHFDGSCFLQNVREKSRKHGLEHLQSIILSEILGDKRIMFASEQQGISRIQHRLQNKRLLLILDDVDKHEQLQTLVGRPDCFGPGSKVVITTRDKQLLASHHVQKTYKVKKLNKNHALQLLTWKVFKSEHVYPAYVEVLNRAVTYACGLPLALEVIGANLCGKSIQQCISVIDQYKRIPNNRIQETLKVSFDALQEEEKRVFLDIACCFKGYKLTEVEEILHAHHGACMKYHIGVLAEKSLIKIGQYDRVTLHDLVEDMGKEIVRQESAEEPGKRSRLWLPKDIIQVLEDNTGTSEIKIICLDFPLFENKMVEWNGMAFQKMQNLKTLIIRNGIFSDDPKCFPNSLRVLEWWRYPSHCLPSNFQPKQLAICKLPHSLFMSFEMDGLSKKLRNLRVLNFECCECLTQIPEAVSDLQNLEELSFQNCVNLVRVHNSVGLLEKLRILEASGCIKLRNFPPLKLTSLEKLELSHCSSLESFPEIIGKMENIRELRLLGTFIKELPLSFKNLTRLKKLSLLFCGIVQLQSSIVMMPELTFIEAWGWKGWQWIKWEEDEEKDGSMISSKVELLWAPKCNLRDDFFQIGFTRFAHVKDLDLSNNNFTHLPECIKECQFLKKLDVSCCNHLREIRGIPPKLKHFNATNCLSLTSSSISMFLNQDLHANRKTMLVLPGSWKPEWFDHISYGPSCSFWIRNKFPGKVLCHFVAPEDRDIRDYVKPMLCINDKVYLCFFDRLKFLKLGAEHTFLFDLRNLIFTNNLYEVPLQNEWNPVKVIFFNLKAASMPTQVPIQIGIHVFKRESSNEDIMFTNPYTKKRKLEKILTGFPNTSNYILDFDLSGYWFSQYMQAFHQDQILNNGKIKLLTG* 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0891 1104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 449 IPR027417 -
Vra1g0891 1104 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 921 IPR044974 GO:0006952
Vra1g0891 1104 Gene3D - 355 439 IPR042197 -
Vra1g0891 1104 Pfam NB-ARC domain 203 419 IPR002182 GO:0043531
Vra1g0891 1104 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 15 921 - -
Vra1g0891 1104 ProSiteProfiles TIR domain profile. 10 186 IPR000157 GO:0007165
Vra1g0891 1104 Gene3D - 186 351 IPR027417 -
Vra1g0891 1104 Pfam TIR domain 12 182 IPR000157 GO:0007165
Vra1g0891 1104 SUPERFAMILY L domain-like 548 897 - -
Vra1g0891 1104 SUPERFAMILY "Winged helix" DNA-binding domain 426 533 IPR036390 -
Vra1g0891 1104 Gene3D - 4 185 IPR035897 -
Vra1g0891 1104 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 162 IPR035897 -
Vra1g0891 1104 Gene3D Ribonuclease Inhibitor 545 910 IPR032675 -
Vra1g0891 1104 PRINTS Disease resistance protein signature 221 236 - -
Vra1g0891 1104 PRINTS Disease resistance protein signature 297 311 - -
Vra1g0891 1104 PRINTS Disease resistance protein signature 390 404 - -
Vra1g0891 1104 PRINTS Disease resistance protein signature 702 718 - -
Vra1g0891 1104 SMART till_3 11 159 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0891 Vra-Chr1 10358270 10368416 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0891 12 759 WRKY Transcription Factor Family AT4G12020 30.346 4.60e-75 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0891 - - vra:106764825 1794.25