Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0888 ATGGAGTGCAATAAGGACGAGGCTACCAGGGCTAAAGAAATTGCGGAGAGGAAGTTTGCTGCAAAGGATATATCAGGTGCAAAGAAATTTGCTTTGAAGGCCCTACATCTATATCCTGAACTTGAGGGTATTTCTCAAATGGTAGCAACACTTGATGTATATATTTCTGCTGAGAATAAAGCAAACGGAGAAGCAGATTGGTACGGTGTACTTGGGGTGGATTCCCTTGCTGACGATGATACAGTAAGGAGACAATACAGGAAGTTAGCTCTCATGCTTCACCCTGATAAGAACAAGTCCATCGGTGCTGATGGGGCCTTTAAACTTGTGTCAGAGGCATGGAGTTTACTGTCAGATAGGGCTAAAAGAGCAGCATATGATAAGAGAAGTGGAAAAGAACGGAAAGTTTCTGCCAAGTTTGGAGGTTCATCAGCACAAAAAAGCACTAATGGTAGTTACAATTTTACTAAGACTACCCCTTCAAGTGCAACTGCTCAGAAGAATACTGCTAAAGAACACACTTCATCTTCTGCTCATAAGTCAAAATCAAATACATTTTGGACTGTTTGCAATAGGTGCAAAATGCAGTACGAGTATCTTAGAGTTTATCTTAACCTTAAGCTCTTATGTCCCTGCTGCCGTACAGCATTTGTTGCTGTAGAGACTGCTCCTCCACCTGCAAGTGGTATTAGGCCTGCAACTCAATGGGATTTTTCACAGAAGAAGCAAAGTTCCAATCGCCAATTACCTAGTAAAAGCAAATCAAATGCAGGAAAGCATGACATGGCTCCTCCAAATGTTGGAGCAGGGTCTTATAATAATACTGAAACAGCCAGTTTCCAATGGGCTCCATTCTCAAAATCATCTGGTGTTTCCAACGTTGCTCAAGCTGCAAGTGTGGTTCAGCAGGCATATGACAAAGTGAGGCGAGATCGTGAGGAGGCACAAGCTGCTAGCAAAAGGGAAGAAGCCTTAAAAAGGAAGCAGCATGCTTCTAAAAAGGGTTACTATAATCCTGCTAAGAAAAGAAGAGGGGGCACGGAGGATGCAAGTGCAAGTGGTGGTAAGGAAAACCAAATGGGTGGGGGAACAAACCCATCTAAACAGGCTAATTTTGAGTATAATAGGGTTAATGGAACCAACAAGACCGACAGTGTGGGGGATATCTCCCTAGTTGAACTTCGGAATCTTCTTATGGAGAAAGCTAGAAAAGAAATTAGCAATAAGCTCAGGGAAAATCAGTCAAATGCTGTTGATAAAACAGTGATGAAAGACAGTGGAAATAACTTCAATAAAGTGAACGATAAAGGAGAAAAAGTCCTAAGAAATTCTGAAATGTGTGCTCAAGATAACATCGCCATCAAATCGTTTGCAGGCTCTACAATCGCTAAAGGTAATAGAAAATTTCTAGAAACAACAGCTATAGATGTACCAGATCCTGACTTCCATGATTTTTACAAAGATCGAACTGAAGTATCTTTCACTCAAAATCAAGTATGGGCTGTATATGATAATGATGATGGGATGCCACGATGTTATGCAATGATTTGTGGCATCATCTCCCTGAATCCATTCAAGATAAAGATCAGTTGGCTCAACCCAAACAACACCAACAGTAAACTGGGCCCCATTAAATGGGTTGCTTCAGGATTTTCAATAATTTGTGGGGATTTCAGATTGAGCAGACCTGAAATCTGTAGGTCGCCCAACTTTTTCTCCCACAAGGTCAGGTGGAGAACAGGTGCTGATGGGGCTATTTGTATATATCCCAGGAAAGGGGATGTTTGGGCCATATATAGGAATTGGTCTCCTGTCTGGGATGAGCTAACACCGGATGAGGTTATACACAAGTTTGATGTGGTTGAAGTACTTGAGGATTTTATTGAAGGGCATGGCACAAATGTTATCCCACTGGTCAAAGTGGCTGGATTCAGGACGGTATTTCACCACCACTTAGATCCAACAGAAATCAGGATCATTCCGATGGAAGAGATGTTTCGATTCTCTCATCAAATACCTTCATATGTACTCACAGGTCAAGAAGCTCCAGATGCTCCAAAGGGTTGCAGGGTGTTGGACCCAGCTGCTACTCCAATTGAGTTTCTTCAGCTAATAGAAGTTGTGAAGGAGGAAGACATGGCATACAAAGATGATACTGATGTCAAAGAACTAAGTGATAACATAAAAAAAGATAGAATTGAGGAAATGATAAACTATATAGGAAAAATTGAGGAAGAAAAGGAGGGGAAGGATGAAGACGTGCAGGAAGTAGATACAAGTGTAAACATGACCAAAGCTAATAGTGAGGAAATGATCAATGATGTGGGGAAACATGGGGAAGGAAAGCAGGAAAAGAACAAAGATATGCAGTCAGTAGAAACTTTGGAAGAGGACAGAGAGAAACAAAATTTGCAGTAG 2418 0.414 MECNKDEATRAKEIAERKFAAKDISGAKKFALKALHLYPELEGISQMVATLDVYISAENKANGEADWYGVLGVDSLADDDTVRRQYRKLALMLHPDKNKSIGADGAFKLVSEAWSLLSDRAKRAAYDKRSGKERKVSAKFGGSSAQKSTNGSYNFTKTTPSSATAQKNTAKEHTSSSAHKSKSNTFWTVCNRCKMQYEYLRVYLNLKLLCPCCRTAFVAVETAPPPASGIRPATQWDFSQKKQSSNRQLPSKSKSNAGKHDMAPPNVGAGSYNNTETASFQWAPFSKSSGVSNVAQAASVVQQAYDKVRRDREEAQAASKREEALKRKQHASKKGYYNPAKKRRGGTEDASASGGKENQMGGGTNPSKQANFEYNRVNGTNKTDSVGDISLVELRNLLMEKARKEISNKLRENQSNAVDKTVMKDSGNNFNKVNDKGEKVLRNSEMCAQDNIAIKSFAGSTIAKGNRKFLETTAIDVPDPDFHDFYKDRTEVSFTQNQVWAVYDNDDGMPRCYAMICGIISLNPFKIKISWLNPNNTNSKLGPIKWVASGFSIICGDFRLSRPEICRSPNFFSHKVRWRTGADGAICIYPRKGDVWAIYRNWSPVWDELTPDEVIHKFDVVEVLEDFIEGHGTNVIPLVKVAGFRTVFHHHLDPTEIRIIPMEEMFRFSHQIPSYVLTGQEAPDAPKGCRVLDPAATPIEFLQLIEVVKEEDMAYKDDTDVKELSDNIKKDRIEEMINYIGKIEEEKEGKDEDVQEVDTSVNMTKANSEEMINDVGKHGEGKQEKNKDMQSVETLEEDREKQNLQ* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0888 805 MobiDBLite consensus disorder prediction 137 178 - -
Vra1g0888 805 Pfam Domain of unknown function (DUF3444) 473 681 IPR024593 -
Vra1g0888 805 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Vra1g0888 805 Pfam DnaJ domain 66 127 IPR001623 -
Vra1g0888 805 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Vra1g0888 805 MobiDBLite consensus disorder prediction 223 272 - -
Vra1g0888 805 MobiDBLite consensus disorder prediction 747 805 - -
Vra1g0888 805 MobiDBLite consensus disorder prediction 311 330 - -
Vra1g0888 805 MobiDBLite consensus disorder prediction 771 805 - -
Vra1g0888 805 MobiDBLite consensus disorder prediction 311 371 - -
Vra1g0888 805 MobiDBLite consensus disorder prediction 352 371 - -
Vra1g0888 805 CDD DnaJ 66 119 IPR001623 -
Vra1g0888 805 SUPERFAMILY Chaperone J-domain 60 126 IPR036869 -
Vra1g0888 805 PANTHER BNAC03G44070D PROTEIN 1 703 - -
Vra1g0888 805 MobiDBLite consensus disorder prediction 233 255 - -
Vra1g0888 805 Gene3D DnaJ domain 63 184 IPR036869 -
Vra1g0888 805 SMART dnaj_3 65 122 IPR001623 -
Vra1g0888 805 PRINTS DnaJ domain signature 68 86 IPR001623 -
Vra1g0888 805 PRINTS DnaJ domain signature 86 101 IPR001623 -
Vra1g0888 805 PRINTS DnaJ domain signature 102 122 IPR001623 -
Vra1g0888 805 PRINTS DnaJ domain signature 122 141 IPR001623 -
Vra1g0888 805 Coils Coil 305 328 - -
Vra1g0888 805 MobiDBLite consensus disorder prediction 141 172 - -
Vra1g0888 805 PANTHER BNAA04G14940D PROTEIN 1 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0888 Vra-Chr1 10317531 10322279 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0888 4 229 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.051 9.42e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0888 - - gmx:100816712 1257.66