Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0867 ATGCCTTTGAAGGAATCAAGAATATCAAGTACTCTATCAGATTTCATGCCTGCCATGAAAAAGAATTCTGAGCAGACTCATTTTGGATCTGTTTTCAACAAGTTATTGAAGGAGCTTCGAGAACCTGTTGACTTTGAACTTCCTGATTGGTTTAATAAATCAAAGCCAATGCAGTACTCCTATATAAAACGCAATATATATCTCACAAAGAAGGTCAAAAGATCCCGGTTTGACGATGATGGCATATTCTGTTCCTGTACTCCTTCCGCTGGATCTACTAGTGTATGTGGTAGAGATTGCCACTGTGGGATGCTTCTGTCTAGCTGTTCATCAGGCTGTAAATGTGGGAGCTCTTGTCTTAACAAACCGTTCCAGAATCGCCCTGTGAAAAAGATGAAATTGGTTCAGACTGAGAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATCAAACATGGGGAGTTTGTTATAGAATATGTTGGAGAAGTCATTGATGACAGAACATGTGAGGAAAGGCTTTGGAACATGAAACACCGTGGTGAAACGAATTTCTACTTATGTGAAATCAATCGAGATATGGTGATAGATGCAACATATAAGGGAAACAAATCAAGATACATCAACCATAGTTGCTGTCCAAATACTGAGATGCAGAAATGGATAATTGATGGTGAAACAAGAATTGGCATATTTGCAACTCGTGACATACAAAAGGGCGAGCATCTGACTTACGATTACCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGTGCTGCTGCATGTAGGCGTAAATTGGGTGTTCGACCTACGAAGCCTAAAGTGTCTTCAGATGCTGCATTAAAATTAGTTGCATACCAGGTTTATCAGAATGGACGCTTGCAAATTGGAGGTTCTCGTGTTAACCACCGAAAATGCTTACACAATTGCATTGGTGAAGTTATTAGAATAAAAAGCTTTGAAAATGAGAGGTTTGGAGTCATTAAAAGGTTTGATGAACATTCTCGAAAACATTCAATCATGTTTGAGGATGGTCGTGTTGAAATTTATGACATGTCAAAAGAGGACTGGGAGCTTGTGAGATAG 1092 0.3938 MPLKESRISSTLSDFMPAMKKNSEQTHFGSVFNKLLKELREPVDFELPDWFNKSKPMQYSYIKRNIYLTKKVKRSRFDDDGIFCSCTPSAGSTSVCGRDCHCGMLLSSCSSGCKCGSSCLNKPFQNRPVKKMKLVQTEKCGSGIVADEDIKHGEFVIEYVGEVIDDRTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIQKGEHLTYDYQFVQFGADQDCHCGAAACRRKLGVRPTKPKVSSDAALKLVAYQVYQNGRLQIGGSRVNHRKCLHNCIGEVIRIKSFENERFGVIKRFDEHSRKHSIMFEDGRVEIYDMSKEDWELVR* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0867 363 SMART set_7 130 253 IPR001214 GO:0005515
Vra1g0867 363 SUPERFAMILY SET domain 41 259 IPR046341 -
Vra1g0867 363 Gene3D SET domain 46 285 IPR046341 -
Vra1g0867 363 ProSiteProfiles AWS domain profile. 79 128 IPR006560 GO:0005634|GO:0018024
Vra1g0867 363 Pfam SET domain 141 246 IPR001214 GO:0005515
Vra1g0867 363 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 27 361 - -
Vra1g0867 363 PANTHER SET DOMAIN PROTEINS 27 361 - -
Vra1g0867 363 SMART shorttest3 79 129 IPR006560 GO:0005634|GO:0018024
Vra1g0867 363 ProSiteProfiles Post-SET domain profile. 253 269 IPR003616 -
Vra1g0867 363 CDD SET_ASHR3-like 131 269 - -
Vra1g0867 363 ProSiteProfiles SET domain profile. 130 247 IPR001214 GO:0005515
Vra1g0867 363 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 52 307 IPR025787 -
Vra1g0867 363 SMART PostSET_3 253 269 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0867 Vra-Chr1 10152024 10160535 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0867 103 268 C2H2 Transcription Factor Family AT2G23740 34.946 3.28e-23 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vra1g0867 SET 1.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0867 - - gmx:100808183 665.611