Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0866 ATGGCAACTCAGATGAGTAAGAAGAGAAAGTTTGTTGCGGACGGAGTGTTCTTTGCCGAACTGAACGAGGTCCTGACACGTGAGTTGGCAGAGGATGGTTATTCTGGCGTCGAGGTTAGGGTTACGCCTATGCGCACCGAGATCATCATCAGAGCCACCAGAACCCAAGCCGTTCTCGGTGAGAAGGGGAGGAGAATTAGAGAACTGACTTCAGTGGTGCAGAAGAGGTTCAAGTTTCCTGAGAACAGTGTTGAGCTTTATGCGGAAAAGGTGAACAACAGAGGTCTATGTGCCATTGCTCAGGCCGAGTCTCTTCGCTACAAGCTCCTCGGTGGTCTTGCTGTTCGCAGGGCTTGCTATGGTGTTTTAAGATTTGTGATGGAAAGCGGTGCCAAGGGATGCGAGGTCATTGTTAGTGGAAAACTGAGAGCTCAAAGAGCCAAATCCATGAAATTCAAGGATGGGTATATGATTTCTTCTGGACAACCAGTCAAGGATTACATCGACTCTGCTGTGAGACATGTGCTCCTTAGACAGGGTGTTCTTGGTATAAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCCCTCCCAGATATTGTCACAATCCACACTCCCAAAGAGGAAGAATACAGTCAGCCTGCTACTGCTACTGCTCCTGTTTTGGCCAACGATATTGAGGTTCCTGTTGCTTAA 717 0.4784 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEYSQPATATAPVLANDIEVPVA* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0866 238 CDD 40S_S3_KH 15 95 - -
Vra1g0866 238 TIGRFAM uS3_euk_arch: ribosomal protein uS3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Vra1g0866 238 Pfam KH domain 20 93 IPR004044 GO:0003723
Vra1g0866 238 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Vra1g0866 238 Gene3D - 93 220 IPR036419 -
Vra1g0866 238 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 226 - -
Vra1g0866 238 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Vra1g0866 238 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Vra1g0866 238 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Vra1g0866 238 Gene3D - 1 91 IPR015946 -
Vra1g0866 238 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Vra1g0866 238 PANTHER 40S RIBOSOMAL PROTEIN S3-RELATED 3 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0866 Vra-Chr1 10145404 10151026 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0866 1 228 Cytoplasmic Ribosomal Protein Gene Family AT2G31610 89.956 1.05e-152 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0866 K02985 - gmx:100499737 439.884