Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0865 ATGGCGACTCAGATGAGTAAGAAGAGAAAGTTTGTTGCGGACGGAGTGTTCTTCGCCGAACTGAACGAGGTTTTGACGCGTGAGTTGGCTGAGGATGGTTACTCCGGCGTGGAGGTTAGGGTTACGCCTATGCGAACCGAGATCATCATCAGAGCCACCAGAACCCAAGCTGTTCTAGGTGAGAAGGGAAGGAGAATTAGGGAACTGACTTCAGTGGTGCAGAAGAGATTCAAGTTTCCGGAAAACAGTGTTGAGCTTTATGCGGAAAAGGTGAACAACAGAGGTCTATGTGCCATTGCTCAGGCTGAGTCTCTTCGTTACAAGCTCCTTGGAGGTCTTGCTGTTCGCAGGGCTTGCTATGGTGTTTTGAGATTTGTGATGGAAAGTGGTGCCAAGGGATGCGAGGTAATTGTCAGTGGAAAACTAAGAGCTCAGAGAGCCAAGTCCATGAAATTCAAGGATGGGTACATGATTTCTTCTGGACAACCAGTGAAGGATTACATTGATTCTGCAGTGAGACATGTTCTCCTAAGACAGGGTGTTCTTGGTATAAAGGTTAAGATCATGCTTGATTGGGATCCTAAAGGAAAACAGGGTCCTAAAACTCCCCTCCCAGATATCGTCACAATTCACACTCCAAAGGAGGAGGAAGAGTATGCCCGGCCTGCTTCTGTTTTGGCAACAGCTGATATTGAGGTCCCCGTTGCTTGA 711 0.4768 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYARPASVLATADIEVPVA* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0865 236 CDD 40S_S3_KH 15 95 - -
Vra1g0865 236 Pfam KH domain 20 93 IPR004044 GO:0003723
Vra1g0865 236 Gene3D - 93 230 IPR036419 -
Vra1g0865 236 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Vra1g0865 236 TIGRFAM uS3_euk_arch: ribosomal protein uS3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Vra1g0865 236 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Vra1g0865 236 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Vra1g0865 236 Gene3D - 1 91 IPR015946 -
Vra1g0865 236 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Vra1g0865 236 PANTHER 40S RIBOSOMAL PROTEIN S3-RELATED 3 232 - -
Vra1g0865 236 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 232 - -
Vra1g0865 236 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0865 Vra-Chr1 10141821 10143888 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0865 1 229 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 89.083 3.86e-153 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0865 K02985 - gmx:100795581 451.825