Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0864 ATGGCTAATTTGCTGACACTGCTTTTTTATGTGGAGATGATAGTGGTGAGTGGTTTCAGTTTGGGAGCAAGTGGCTTGAACATGAACTACTACTTGTTCAGTTGCCCTTTGGCTGAACTTATTGTTAAGAACACAGTCAACAGAGCTCTGCAGAATGATCCCACTCTAGCAGCAGGGCTTGTTAGAATGCACTTCCATGATTGTTTCATAGAGGGATGTGATGGCTCTGTTCTGATCGACTCCACTGAGGACAACACAGCAGAAAAAGATTCACCAGCAAATTTGAGCTTGAGGGGCTATGAAGTAATAGATGATATCAAGGAAGCGCTTGAAAATCAATGCCCAGGAGTCGTTTCATGTGCTGACATTCTTGCTATGGCTGCTAGAGATGCAGTTTTCTTTGCAGGGGGTCCTGTGTATGACATACCAAAAGGTAGGAAGGATGGAACAAGGTCCAAAATTGAGGATACCATCAATCTTCCTGCACCCATTTTCAATGCTTCTCAGCTCATCAAGGTGTTTGGGCAACGCGGGTTTTCAGCAAAAGACATGGTGGCTCTCTCAGGAGCTCACACATTAGGAGTGGCAAGGTGTTCTTCATTTAAGCAGAGACTTACCCCACTGGATCCATCTTTGGACTCACAATTTGCGAAGACGCTCTCCAAGGCATGCAGTGCTGGTGACAGTGCAGAGCAACCCTTTGACTCCTCCAGGAACGATTTCGACAACCTATACTTCAACGCTCTGGTCTCAAACAACGGTGTTCTCACATCAGACCAAACGTTGTACACTACCCCACAAACCAGGAACATTGTGAACACTTATGCAATGAACCAAGCTTTGTTCTTCTTGGATTTTCAACAGGCGATGGTGAAGATGAGCAAGCTCGATGTCAAAGAAGGGTCCAAAGGGGAAGTTCGAAAAAATTGCCATAAAATAAATTGA 945 0.4487 MANLLTLLFYVEMIVVSGFSLGASGLNMNYYLFSCPLAELIVKNTVNRALQNDPTLAAGLVRMHFHDCFIEGCDGSVLIDSTEDNTAEKDSPANLSLRGYEVIDDIKEALENQCPGVVSCADILAMAARDAVFFAGGPVYDIPKGRKDGTRSKIEDTINLPAPIFNASQLIKVFGQRGFSAKDMVALSGAHTLGVARCSSFKQRLTPLDPSLDSQFAKTLSKACSAGDSAEQPFDSSRNDFDNLYFNALVSNNGVLTSDQTLYTTPQTRNIVNTYAMNQALFFLDFQQAMVKMSKLDVKEGSKGEVRKNCHKIN* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0864 314 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Vra1g0864 314 Pfam Peroxidase 42 277 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra1g0864 314 PANTHER PEROXIDASE 25-RELATED 19 312 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0864 314 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601
Vra1g0864 314 Gene3D Peroxidase, domain 2 161 293 - -
Vra1g0864 314 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0864 314 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0864 314 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0864 314 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0864 314 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0864 314 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0864 314 PRINTS Plant peroxidase signature 232 247 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0864 314 PRINTS Plant peroxidase signature 248 265 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0864 314 PRINTS Plant peroxidase signature 288 301 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vra1g0864 314 CDD secretory_peroxidase 25 313 IPR033905 GO:0004601|GO:0042744
Vra1g0864 314 Gene3D - 29 314 - -
Vra1g0864 314 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra1g0864 314 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra1g0864 314 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra1g0864 314 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra1g0864 314 PRINTS Haem peroxidase superfamily signature 234 249 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vra1g0864 314 SUPERFAMILY Heme-dependent peroxidases 25 314 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vra1g0864 314 PANTHER PEROXIDASE 47 19 312 - -
Vra1g0864 314 ProSiteProfiles Plant heme peroxidase family profile. 25 314 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0864 Vra-Chr1 10128940 10131066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0864 2 314 Peroxidase AT4G33420 73.802 1.35e-173 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0864 K00430 - gmx:100809245 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0864 1 10128940 10131066 Vra8g1698 8 34169903 34171694 PCT