Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0853 ATGAATAAAGAAGATGACGTGAACCATGGTAACTATGAGCATGACATAGAAATTGAAGGTCTGTTGGATGGGAATGAGGAAAATAGAAGGTACTGGTCAGGGTTATCTGACAGAAGCTTGTCTCATACAAGGCCACTTCTTGTGAAGAGGACCAACACGACCTCACAGATCGCTATAGTTGGTTCAAACCTTAGCCCTATTGAAAGCCTTGACTATGAGATTTTCTATAATGAGATATTGAAGCATGACTGGAGGTCCAGAGAGAAGTTTGAGAAGATCCAATATACGGTGCTTAAGTGGGTATTTGCTCTTCTTATTGGATTAGGCACTGGATTGGTTGGCTTCTTTAACAGTTTTGCAGTTGAGAACATATCTGGTTTCAAGCTGCTTCTCACCACCACTCTCATGTCTAAAAATAGATATCTTGAGGCATTTTTAGCATATGCTGGTCTGAATATATGTTTAGCAGCAGCAGCTGCTTCACTTTGTGCTTTCATTGCTCCGGCAGCAGCAGGCTCTGGCATTCCAGAGGTAAAAGCATATCTCAATGGGGTGGATGCTCACTATATATTGGCTCCCAGCACCCTTTTGGTAAAGATATTTGGTTCCATCCTTGGAGTTTCTGCTGGATTTGTGGTGGGAAAAGAGGGACCTATGGTACATACAGGTGCATGCATAGCTTCTTTATTGGGACAGGGTGGATCTCGCAAGTTTCACTTGACTTGCAGTTGGCTTAGATTTTTCAAAAACGACCGAGACCGGCGAGACATGATTACTTGTGGTGCAGCTGCTGGTGTTGCTGCTGCCTTTCGTGCACCAGTAGGTGGTGTCCTCTTTGCCCTTGAAGAGGCAGCTTCATGGTGGCGGAGTGCACTTCTTTGGAGGACATTCTTCACAACTGCAGTAGTTGCTGTTGTTTTAAGAGTTGCAATTCAGTTTTGTGCCACAGGAAAATGTGGGCTATTTGGTGCAGGTGGTTTGATAATGTATGATGTTGGTTCAGCCAATATAACATATAGTGCTAGTGGTATATTTGCAGTACTGCTTTTGGGTGCCGTTGGTGGAATTCTGGGAAGCATATATAATTACCTGGTGGATAAGGTTGTTCGAACATATAGCATCATCAATGAAAAAGGTCCAGCTTTCAAAATCTCTCTTGTTGTGACAGTTGCTCTTTTGACATCATGTTGCTTTTATTTCTTGCCATGGGTTGCACACTGCATTCCCTGTCCTTCTAGTTCAACATTGGCCTGTCCCTCTATTGATGAGTCTGGAGAATATCAAAACTTTCAATGCCCTCCAGGATACTACAATGATCTTGCTTCCCTCTTTCTGAACACCAATGATGATGCTATTCGTAATCTACTCAGCCCCAAGATAAACAAAGAGTTTCATATTTCCAGTTTGTTTATCTACTTTGCTACTATTTACTGTCTTGGGATAATCACTTATGGTATCGCCATTCCATCCGGGCTCTTCATTCCTGTGATACTTGCTGGTGCTACCTACGGCCGTCTTGTTAGCCGGATCTTTGAACCGATCACAGGACTTGACAGAGGACTCTTTGCCCTACTTGGAGCTGCTTCCTTCCTTGGTGGCACCATGAGAATGACAGTTTCTATTTGTGTCATATTGCTTGAGCTCACCAATGATCTCTTGTTACTTCCACTTGTGATGTTGGTCTTGTTAGTCTCAAAAACTGTGGCTGACAGCTTCAACAAGGGTGTTTATGATCTAATACTTCAGATCAAAGGACTTCCATATTTGGAGGCTCATGCAGAACCTTACATGAAGAATTTAGTTGCACGTGATGTTGTTTCAGGTCCATTGATTACCTTTTCTGGAGTTGAAAAGGTTGGCATTATATGGCATGCTTTGAATGCTACAGGGCATAATGGATTTCCTGTCATTGATGAACCACCTTTCACAGATGCACCAGAATTATGTGGGGTTGTACTGAGGTCTCATTTACTAGTGTTGCTGAAGGAGAAGATTTTCTCAAATGCTAAGGATTTCATAGATCAAAGTAGCTTCCAAAGAATTTCTACTTTAGATTTTGGAAAGGCAGGATCAGGAAAGGGTATCAAACTAGAGGATATTGATATTGATGAGGAAGAAATGGATATGTATGTTGATCTCCATCCCATAACCAATGCATCTCCTTACACTGTGGTTGAGACAATGCCACTTGGCAAAGCTGCTATCATTTTCCGCCAACATGGACTCAGGCACATGTGTGTTGTTCCCAAGAGCCAAGGGAGACCTCCAGTTGTTGGGATTCTGACACGCCATGATTTTATGCCAGAGCATGTTTTGGGACTATACCCTCACATCAAGTCTCACAAACAGCATTTAGGGATATCAATGAAAAAGATTATTTCTTCAGTATTGGAGTGCTGCATTCATTAG 2409 0.4238 MNKEDDVNHGNYEHDIEIEGLLDGNEENRRYWSGLSDRSLSHTRPLLVKRTNTTSQIAIVGSNLSPIESLDYEIFYNEILKHDWRSREKFEKIQYTVLKWVFALLIGLGTGLVGFFNSFAVENISGFKLLLTTTLMSKNRYLEAFLAYAGLNICLAAAAASLCAFIAPAAAGSGIPEVKAYLNGVDAHYILAPSTLLVKIFGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKFHLTCSWLRFFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRVAIQFCATGKCGLFGAGGLIMYDVGSANITYSASGIFAVLLLGAVGGILGSIYNYLVDKVVRTYSIINEKGPAFKISLVVTVALLTSCCFYFLPWVAHCIPCPSSSTLACPSIDESGEYQNFQCPPGYYNDLASLFLNTNDDAIRNLLSPKINKEFHISSLFIYFATIYCLGIITYGIAIPSGLFIPVILAGATYGRLVSRIFEPITGLDRGLFALLGAASFLGGTMRMTVSICVILLELTNDLLLLPLVMLVLLVSKTVADSFNKGVYDLILQIKGLPYLEAHAEPYMKNLVARDVVSGPLITFSGVEKVGIIWHALNATGHNGFPVIDEPPFTDAPELCGVVLRSHLLVLLKEKIFSNAKDFIDQSSFQRISTLDFGKAGSGKGIKLEDIDIDEEEMDMYVDLHPITNASPYTVVETMPLGKAAIIFRQHGLRHMCVVPKSQGRPPVVGILTRHDFMPEHVLGLYPHIKSHKQHLGISMKKIISSVLECCIH* 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0853 802 Pfam Voltage gated chloride channel 156 570 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vra1g0853 802 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 33 782 - -
Vra1g0853 802 PRINTS Chloride channel signature 168 185 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vra1g0853 802 PRINTS Chloride channel signature 199 218 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vra1g0853 802 PRINTS Chloride channel signature 263 282 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vra1g0853 802 PRINTS Chloride channel signature 488 508 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vra1g0853 802 PRINTS Chloride channel signature 520 536 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vra1g0853 802 PRINTS Chloride channel signature 538 557 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vra1g0853 802 PRINTS Chloride channel signature 576 590 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vra1g0853 802 Gene3D Clc chloride channel 91 589 - -
Vra1g0853 802 CDD CBS_pair_voltage-gated_CLC_euk_bac 602 769 - -
Vra1g0853 802 SUPERFAMILY CBS-domain pair 593 767 IPR046342 -
Vra1g0853 802 ProSiteProfiles CBS domain profile. 716 780 IPR000644 -
Vra1g0853 802 SUPERFAMILY Clc chloride channel 80 592 IPR014743 -
Vra1g0853 802 SMART cbs_1 609 662 IPR000644 -
Vra1g0853 802 SMART cbs_1 720 771 IPR000644 -
Vra1g0853 802 Gene3D - 590 772 IPR046342 -
Vra1g0853 802 Pfam CBS domain 720 766 IPR000644 -
Vra1g0853 802 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 33 782 - -
Vra1g0853 802 PRINTS Plant CLC chloride channel signature 284 292 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vra1g0853 802 PRINTS Plant CLC chloride channel signature 298 308 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vra1g0853 802 PRINTS Plant CLC chloride channel signature 316 323 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vra1g0853 802 PRINTS Plant CLC chloride channel signature 440 456 IPR002251 GO:0005247|GO:0006821|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0853 Vra-Chr1 10015706 10023397 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0853 5 782 Ion Channels AT5G49890 70.935 0.0 1092
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0853 K05016 - gmx:100809070 1268.83