Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0852 ATGGCAACTAGACTTCAGTTTGAAAATAATTGTGAAGTTGGAGTCTTCTCTAAACTTACCAATGCCTACTGCTTGGTTGCCATTGGAGGTTCTGAAAGCTTCTACAGTGTATTTGAAGCTGAATTAGCTGATGTTATCCCTGTGGTCAAGACATCAATTGGGGGTACTAGGATTATTGGTCGTCTTTGTGCCGGAAACAAGAATGGGCTTCTCTTGCCCCATACCACCACAGATCAAGAACTTCAGCATTTGAGAAACAGTCTACCTGATCAAGTTGTTGTTCAACGTATAGACGAAAGGCTATCTGCTCTGGGGAATTGTATAGCATGTAATGATCATGTGGCCCTCACACACACTGATCTTGACAGGGAGACTGAAGAGATGATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACCATAGCAGGCAACATTCTTGTTGGTAGTTACTGTGCCTTCTCCAATAGGGGTGGTTTGGTTCACCCTCATACTTCCATAGAAGACTTGGATGAGCTTTCTACACTTCTTCAGGTTCCTTTGGTGGCTGGGACAGTTAACCGGGGCAGTGAAGTAATAGCAGCTGGAATGACAGTTAATGATTGGACAGCATTTTGTGGTTCAGACACCACTGCAACAGAGCTATCTGTAATTGAGAGTGTTTTCAAGCTCAGAGAAGCTCAGCCTAGTGCCATCGTGGACGAGATGAGGAAATCCCTCGTTGATACCTATGTCTGA 738 0.4431 MATRLQFENNCEVGVFSKLTNAYCLVAIGGSESFYSVFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIDERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLVDTYV* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0852 245 Hamap Translation initiation factor 6 [eif6]. 1 245 IPR002769 GO:0042256|GO:0043022
Vra1g0852 245 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
Vra1g0852 245 Gene3D - 1 225 - -
Vra1g0852 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 245 - -
Vra1g0852 245 CDD IF6 2 223 IPR002769 GO:0042256|GO:0043022
Vra1g0852 245 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Vra1g0852 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 245 IPR002769 GO:0042256|GO:0043022
Vra1g0852 245 TIGRFAM eIF-6: putative translation initiation factor eIF-6 4 224 IPR002769 GO:0042256|GO:0043022
Vra1g0852 245 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Vra1g0852 245 SUPERFAMILY Pentein 1 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0852 Vra-Chr1 9994853 9998540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0852 1 245 Eukaryotic Initiation Factors Gene Family AT3G55620 92.245 6.98e-175 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0852 K03264 - gmx:100800352 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0852 1 9994853 9998540 Vra8g1693 8 34115287 34119219 PCT