Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0842 ATGGCTCAAAAACAAGAAACTTCTTCTGCTTCTTTTATGTCAAAATACAGTTATGATGTTTTTCTTAGTTTTCGTGGTCCAGATACCCGTTTTGGTTTCACTGGTAATCTTTACAGTNCTTTGAGTCAAANNGGAATCTTTACCTTCATNGATGATGAAGCTCTCAGAAAGGGAGAAGAGATCANACCTTCTCTTCGCAAGGCAATCCAAGAATCCAGGATATCCATCATTNTTTTCTCCAAAANCTATGCTTTCTCAACTTTTTGTTTGNACGAACTTCTCCATATCATTCAGTGCCACAAAAATCAGAACATGTGGATTTTGCCTGTGTTTTATGACCTAGAGCCATCTCAATTGCGAAATCAAACAGGGAGTTACCAAGAAGCATTTGAAAAGCATGCTGAAAGATTCAAAGATGACATTCAGAAGCTTCAANAATGGAGGCTGGCTTTGNGTCANGCTGCTNATTTNNCTGGTTTGCATTTCAAAACTGGTGAANNGTATGAGTCTGAGATAGTGAAAAAGATCACAGAAGAGNTCTCCACTAANCTTAATCGACCTCCCTTGCATATTGCTGATTATCCTGTNGGNTTGAAAGNTCGGATGNAACAGATACAAGAACTCATGGGTGGTGAGTTTGATAAGAAAGTGACCATGCTTGGGATTCATGGAATGGGAGGAATAGGAAAATCAACTCTTTCACGTGCCATGTACAACTTGATGGCACATCAATTTGAAGCTTCGCACTTTCTTGCTAATGTCAGGGAAAAATCAGANAAGGATGGTCTGGTGCATATCCAAGAGACAATGTTGTCTGAGCTGGTGGGGGAAACAAATATCAAGTTAGGAGATGTGCATCGAGGAATTCCAATACTACAACACAGACTTTGTGGGAAAAAGGTCCTCCTTGTGCTTGATGATATTAGCAGAAAAGAACAATTGCGAGCAACTGCTGGAGGACTTGATTGGTTTGGCCCTGGTAGCATCATCATCATAACAACAAGGGATAAGCATTTATTAGATGTTCATGGAGTTCAAAAACAGTACATGGTTGGTGAAATTAACTTTAAGGAAGCCCTTGAACTGTTTAAGTGGAATGCTTTCAAGAACAAAGAAATTGATCCATCTTACAAGGAAGTCACAAAGCGTGCAATGTATTATGCCAATGGCCTTCCGTTGGCTTTGGAAACGATAGGCTCGAACTTGTTTGGCAAAACCTTGAATGAATGGGAATCTGCGTTAGAAACTTATGAGAGAATTCCAAATAGAGATATTCAGGAAGTTCTTAGAGTTAGCTATGACAGTTTGGATGCTTATGAGAAAGAAATATTTCTTGANATAGCTTGCTTCTTTAGAGGATGCTCTCTTAGATACCTTACAAATTTGCTTGAGGCAAGAGGTTTTCCTCCAGAATTTGGTCTGAGAGTGCTGGAAGAAAAATCTCTCATTAAAATTCGGAAATGTTCACATGAAACTGTGGTAATGCATGACATGATTCGGTGTATGGGAAAAGAAATAGTTAGACAACAATCAACTCTGCCTCACAAAAGGAATAGGTTGTGGTTTTACGAGGACATTGTTTGCGTGTTGGAGAAAAACATGGAAAATGATAAAATTCAAGCGATGATGTTGGACATGCCAGAACACCAAGAAGAAATGCAATGCATTCCAAAGTTTCAAAAAATAAAAAGCTTACAGATGCTTCTTATAGAAAAGAATGTTGGCTTTCTTAGAAGCCCTGCTGCTCTGCCAAACAATTTGAGAGTGCTGGAATGGCGTGGATATCCTGCAACTTCTTTACCGAGTAATTTTCATTTCAAGAATCTTGTCATACTCAACTTGTCACACAGTTACTTTGGATGGGACAAACCACTACAGAATTCAAAGGTTTTGAGACACTTGATTCTCAGAGGTTGTATGAATATTAGACGAATACCTGACATCTCTGGTTTCCCCAATTTGACAAGATTTTTTGTTGGTGAATGCACAAATCTGTTTGAGATTCATGATTCAGTTGGATCTTTACTTAATCTTAAAGAGTTTTGTGCGGAAGGATGTACCAAGCTCACAATTGGTCCAAGTCGCATAAAGTTGATATCTTTGGAGCATCTGTGCCTTCGGGGCTGCAGTAGTCTTCTTATGTTTCCAGAAGTATTGGCACCAATGCACAAATTAAAACACGTTAACTTGGTAGGAACTGGCATAAGAAATCTGCCACTATCAATGCAAAATCTTGAGGGTATTCAAGTATTGTCCCTGGGGAAAGGCAAAATGCTTGAAATTAATGAATCATCCAATTTCTTTCAAAACCTGCCAATGTTCTTTCCTAATTTGACAAAATTATATTTACGAAACTTAGACATTACAATCCTTCCAGCCAGCATTGAAGAATGTCACTNTTTGAAATTTCTGCACGTCACCAACTGCAAGAAGCTTCAAGAAATTAAAGGACTTCCGTCGAGTATTAATGAGTTCTCCGCAGCAAACTCTCCAGTTGAAGCCAACTCTTTGACATTAAAACTCAGGCAGGCCATTCATTCTGCTGCAATGAGAATATTTGTTGTTCCAGGTCTGAAAATCCCAGAATTGTTTGACCACTCTAGCAGGGGAAGCTCTGTAAGTTTTTGGTTTCGTAAGGAATTGCCCACTCTCGCTGTGTGTGCTATTATTGGAGTCTGGGATAATGTCAAGCCTCCATTCATTGCCAGGTATAATTTCTTTGTTAGAGTAAAAAAGAAAATCTCTAAGTGTGTTTCTTGTTTCCGTTGTGGTAATATAAATTGGACAACTGAGGATAGTCACGTAATTATATTCAACCGTCAATATGATTATCAACATCCATTGAATTCGGATATTCAGAAAGCGCTTTTGACGAATGAGTGGATTCCTGGGAAAATATTGTTGAGGATAAATCCAGAAAATGATTCAAGTAAGTTGGGAGAAATCAGAAGGACAGGAGTTTATGTCAATCGAACATTAAGTAGAATGGAGGATGTTCGGTTCGAAAATCCTTTTGATCTCTATAAAGCAACTACTAGGGAAAATAAACTTGTGGTGCTTGGTGAGGCATCTGATACACAAGAACAGGAACAATCCTCTGCTTTATTCAACCCCACAACCACATTAGAATCTGTTATTGGTGAACAACCTTTGAATTATGAGTACAACAATTCAGATTCAACAGAATCGACATCCACTGTTGACTCCAATAACCAAGATGGAGTACTTGTAGATGATCAACCAATATTAGCTCCAAGTTCTGCAGAGACGCAAAATTCCGAGGCCAAAAGAGAAATCGCACCACTGATATCAGAACTTTCAAGTGAGTCCAATGCTCATGTAAGTATGGAAATTGAGTCAACAGCATCCCAATCACCTAAAGTTGATGAAGTAGAAGCAGGTTTGGAAACTCAGAATCAGTTCAGAAATACTATGATGGTCTTGGAAAATAAGATACATGAAAAGTTGACCAGGATTAGGAAAATGAAAGAAGAATTAGGAGAGAAACTCAGTGCTATTAAAGCCGACATCTCTGCCATTGAAGCTAACAACTCTTCCATTAAAGCTAACATCTCAGACATTAAAGCTATATTTCTGCAGACTGATCAGAGGAAGAACAACTGA 3624 0.3827 MAQKQETSSASFMSKYSYDVFLSFRGPDTRFGFTGNLYSXLSQXGIFTFXDDEALRKGEEIXPSLRKAIQESRISIIXFSKXYAFSTFCLXELLHIIQCHKNQNMWILPVFYDLEPSQLRNQTGSYQEAFEKHAERFKDDIQKLQXWRLALXXAAXXXGLHFKTGEXYESEIVKKITEEXSTXLNRPPLHIADYPVGLKXRMXQIQELMGGEFDKKVTMLGIHGMGGIGKSTLSRAMYNLMAHQFEASHFLANVREKSXKDGLVHIQETMLSELVGETNIKLGDVHRGIPILQHRLCGKKVLLVLDDISRKEQLRATAGGLDWFGPGSIIIITTRDKHLLDVHGVQKQYMVGEINFKEALELFKWNAFKNKEIDPSYKEVTKRAMYYANGLPLALETIGSNLFGKTLNEWESALETYERIPNRDIQEVLRVSYDSLDAYEKEIFLXIACFFRGCSLRYLTNLLEARGFPPEFGLRVLEEKSLIKIRKCSHETVVMHDMIRCMGKEIVRQQSTLPHKRNRLWFYEDIVCVLEKNMENDKIQAMMLDMPEHQEEMQCIPKFQKIKSLQMLLIEKNVGFLRSPAALPNNLRVLEWRGYPATSLPSNFHFKNLVILNLSHSYFGWDKPLQNSKVLRHLILRGCMNIRRIPDISGFPNLTRFFVGECTNLFEIHDSVGSLLNLKEFCAEGCTKLTIGPSRIKLISLEHLCLRGCSSLLMFPEVLAPMHKLKHVNLVGTGIRNLPLSMQNLEGIQVLSLGKGKMLEINESSNFFQNLPMFFPNLTKLYLRNLDITILPASIEECHXLKFLHVTNCKKLQEIKGLPSSINEFSAANSPVEANSLTLKLRQAIHSAAMRIFVVPGLKIPELFDHSSRGSSVSFWFRKELPTLAVCAIIGVWDNVKPPFIARYNFFVRVKKKISKCVSCFRCGNINWTTEDSHVIIFNRQYDYQHPLNSDIQKALLTNEWIPGKILLRINPENDSSKLGEIRRTGVYVNRTLSRMEDVRFENPFDLYKATTRENKLVVLGEASDTQEQEQSSALFNPTTTLESVIGEQPLNYEYNNSDSTESTSTVDSNNQDGVLVDDQPILAPSSAETQNSEAKREIAPLISELSSESNAHVSMEIESTASQSPKVDEVEAGLETQNQFRNTMMVLENKIHEKLTRIRKMKEELGEKLSAIKADISAIEANNSSIKANISDIKAIFLQTDQRKNN* 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0842 1207 Pfam TIR domain 18 182 IPR000157 GO:0007165
Vra1g0842 1207 Gene3D Ribonuclease Inhibitor 695 837 IPR032675 -
Vra1g0842 1207 Gene3D Ribonuclease Inhibitor 544 694 IPR032675 -
Vra1g0842 1207 Gene3D - 354 437 IPR042197 -
Vra1g0842 1207 ProSiteProfiles TIR domain profile. 16 180 IPR000157 GO:0007165
Vra1g0842 1207 SUPERFAMILY "Winged helix" DNA-binding domain 424 530 IPR036390 -
Vra1g0842 1207 Gene3D - 185 350 IPR027417 -
Vra1g0842 1207 Pfam NB-ARC domain 206 436 IPR002182 GO:0043531
Vra1g0842 1207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 446 IPR027417 -
Vra1g0842 1207 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 731 IPR044974 GO:0006952
Vra1g0842 1207 MobiDBLite consensus disorder prediction 1029 1076 - -
Vra1g0842 1207 Gene3D - 15 184 IPR035897 -
Vra1g0842 1207 SMART till_3 17 157 IPR000157 GO:0007165
Vra1g0842 1207 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 157 IPR035897 -
Vra1g0842 1207 Coils Coil 1145 1183 - -
Vra1g0842 1207 SUPERFAMILY L domain-like 542 827 - -
Vra1g0842 1207 PRINTS Disease resistance protein signature 219 234 - -
Vra1g0842 1207 PRINTS Disease resistance protein signature 295 309 - -
Vra1g0842 1207 PRINTS Disease resistance protein signature 388 402 - -
Vra1g0842 1207 PRINTS Disease resistance protein signature 696 712 - -
Vra1g0842 1207 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 16 731 - -
Vra1g0842 1207 MobiDBLite consensus disorder prediction 1029 1095 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0842 Vra-Chr1 9890719 9895954 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0842 196 832 WRKY Transcription Factor Family AT5G45050 30.000 1.56e-68 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0842 - - vun:114182325 1963.35