Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0840 ATGAAACAAAAACCAAAGCATTTTGCGAGTTTCGTTATTTTGGATCAAAAACAAGCAACTTCTTCTGCTTCTTTTATGTCAAAATACAGTTATGATGTTTTTCTTAGTTTTCGTGGTCCAGATACCCGTTTTGGTTTCACTGGTAATCTTTACAGTGCTTTGAGTCAAAAGAGAATCTTTACCTTCATCGATGATGAAGCTCTCAAAAAGGGAGAAGAGATCACACCTTCTCTTCGCAAGTCAATCCAAGAATCCAGGATATCCATCATTGTTTTCTCCAAAAACTATGCTTTCTCAACTTTTTGTTTGGACAAACTTCTCCATATCATTCAGTGCCACAAAAAACAGAACATGTGGATTTTGCCAGTGTTTTATGACATAGAGCCATCTCAAGTGCGACATCAAACAGGGACTTACCAAGAAGCATTTGCAAAACATGCTGAAAGATTCAAAGATGACATTCAGAAGCTTCAACAATGGAGGCTGGCTTTGCGTCATGCAGCTGATTTGGCTGCTTTTCCTTTAAAAACTGGTGAAGAGTATGAGTCTGAGATAGTGAAAAAGATCACGAAAGAGATCTCCATTAAGCTTAATCGACCTCCCTTGCATATTGCTGATTATCCTGTTGGTTTGAAAGTTCGGATGCAACAGATACAAGAACTTATGGGTGGTGAGCTTGATAAGAAAGTGACCATGCTTGGGATTCATGGAATGGGAGGAATAGGAAAATCAACTATTTCACGTGCGATGTACAACTTGATGGCACATCAATTTGAAGCTTCGCACTTTCTTGCTAATGTCAGGGAAAAATCAGATAAGGATGGTCTGGTGCATATCCAAGAGACAATGTTGTCTGAGTTGGTGGGGGAAANAAATATCAAGTTAGGAGATGTGCATCGAGGAATTCCAATACTACAACACAGACTTNGTGGGAAAAAGGTCCTCCTTGTGCTTGATGATATTAGCAAAAAAGAACAATTGCAAGCAACTGCGGGAGGACTTGATTGGTTTGGNCCTGGTAGCATCATCATCATAACAACAAGGGATAAGCATTTGGTAGATGTTCATGGAGTTCAAAAACAGTACATGGTTGGTGAAATTAACTTTATGGAAGCCCTTGAGTTGTTTAAGTGGAATGCTTTCAAAAACAAAGAAGTTGATCCATGTTACAGGGAAGTCACAGAGCGAGCAATGTATTATGCCAATGGCCTTCCATTGGCTTTGGAAACTATAGGCTCGAACTTGTTTGGCAAAACCTTGGATGAATGGGAATCTGCTTTAGAAACTTATGAGAGAATTCCAAATAGAGATATTCAGGAAGTTCTTAGAGTTAGCTATGACAGTTTGGATGCTTATGAGAAAGAAATATTTCTTGATATAACTTGCTTCTTTAGAGGATGCTCTCTTATATACCTTACAAATTTGCTTGAGGCAAGAGGTTTTCCTCCAGAATTTGGTCTGAGAGTGCTGGAAGAAAAATCTCTCATTAAAATTCGAGAATGTCCACATAAAACTGTGGCAATGCATGACATGATTCGGTGTATGGGAAAAGAAATAGTTAGACAACAATCAACTCTGCCTCACAAATGGAATAGGTTGTGGTTTTACGAGGACATTGTTTGCGTGTTGGAGAAAAACATGGAAAATGATAAAATTGAAGGGATGATGTTGATCCCAGAACACCAAGAAGAAATGCAATGCAATCCAAAGTTTGGAAAAATGAAAAGCTTACGGATGCTTCTTATAGAAAAGAAGGTTGGCTTTCTTAGAAGCCTTGTTGCCTTGCCAAATAGTTCGAAGATCCTTATGATCTCAATAAAGCAAGTACTATGGAAAATAAACTTGTGTTGGTTGGTGACGCATCTCATACACAGAAACAGGAACAATCCTCTTCTTTATTCAACCTCACACCCCCATTAG 1920 0.3854 MKQKPKHFASFVILDQKQATSSASFMSKYSYDVFLSFRGPDTRFGFTGNLYSALSQKRIFTFIDDEALKKGEEITPSLRKSIQESRISIIVFSKNYAFSTFCLDKLLHIIQCHKKQNMWILPVFYDIEPSQVRHQTGTYQEAFAKHAERFKDDIQKLQQWRLALRHAADLAAFPLKTGEEYESEIVKKITKEISIKLNRPPLHIADYPVGLKVRMQQIQELMGGELDKKVTMLGIHGMGGIGKSTISRAMYNLMAHQFEASHFLANVREKSDKDGLVHIQETMLSELVGEXNIKLGDVHRGIPILQHRLXGKKVLLVLDDISKKEQLQATAGGLDWFGPGSIIIITTRDKHLVDVHGVQKQYMVGEINFMEALELFKWNAFKNKEVDPCYREVTERAMYYANGLPLALETIGSNLFGKTLDEWESALETYERIPNRDIQEVLRVSYDSLDAYEKEIFLDITCFFRGCSLIYLTNLLEARGFPPEFGLRVLEEKSLIKIRECPHKTVAMHDMIRCMGKEIVRQQSTLPHKWNRLWFYEDIVCVLEKNMENDKIEGMMLIPEHQEEMQCNPKFGKMKSLRMLLIEKKVGFLRSLVALPNSSKILMISIKQVLWKINLCWLVTHLIHRNRNNPLLYSTSHPH* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0840 639 ProSiteProfiles TIR domain profile. 29 197 IPR000157 GO:0007165
Vra1g0840 639 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 29 597 IPR044974 GO:0006952
Vra1g0840 639 Pfam TIR domain 31 198 IPR000157 GO:0007165
Vra1g0840 639 Gene3D - 367 450 IPR042197 -
Vra1g0840 639 Gene3D - 29 196 IPR035897 -
Vra1g0840 639 SMART till_3 30 170 IPR000157 GO:0007165
Vra1g0840 639 SUPERFAMILY Toll/Interleukin receptor TIR domain 22 170 IPR035897 -
Vra1g0840 639 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 29 597 - -
Vra1g0840 639 Pfam NB-ARC domain 218 449 IPR002182 GO:0043531
Vra1g0840 639 Gene3D - 197 364 IPR027417 -
Vra1g0840 639 PRINTS Disease resistance protein signature 232 247 - -
Vra1g0840 639 PRINTS Disease resistance protein signature 308 322 - -
Vra1g0840 639 PRINTS Disease resistance protein signature 401 415 - -
Vra1g0840 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 460 IPR027417 -
Vra1g0840 639 SUPERFAMILY "Winged helix" DNA-binding domain 437 543 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0840 Vra-Chr1 9842712 9845654 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0840 209 602 WRKY Transcription Factor Family AT5G45050 33.095 1.84e-52 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0840 - - var:108320021 1066.22