Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0831 ATGAAAAACTCTGAGGCAACGACACATGATGGTATGGAGATAGAAGCAACAGCTAGGCCTTCTGGAAATGGTTCCACCCTACCAGGGTTGAGTCCTCTCAGTGAGACCCTTTGGAGAGAGAAGGCCAACTCAGAGATCATTGGAGATGTTTCAGCAAGACTCACATGGAAGGATCTGACCGTGATGGTCACTCTTAGCAACGGCGAGACACAAAATGTTTTGGAGGGTCTAACTGGTTATGCTGAACCAGGAACCTTCACTGCTCTCATGGGGCCCTCAGGTTCTGGAAAATCTACTCTTCTTGATGCACTTTCTAGTCGCCTAGCTGCAAATGCCTTTCTTTCAGGCACCATTCTTCTCAATGGACGCAAAGCCAAACTCTCTTTTGGCACTGCAGCTTATGTGACACAAGATGATAACTTGATCGGTACCCTAACAGTGAGGGAGACGATATCATATTCAGCTCGTTTGCGTTTGCCTGATAACATGCCATGGGAAGATAAGAGAGCATTGGTGGAGAGCACCATTGTGGCAATGGGACTGCAAGATTGTGCCGACACAGTGATTGGAAATTGGCACTTGCGTGGGATCAGTGGTGGGGAGAAGAGAAGGGTTAGCATTGCCTTGGAAATCTTGATGAGACCAAGGTTGCTTTTCCTTGATGAGCCAACCAGCGGACTTGACAGTGCTTCAGCTTTCTTTGTGACTCAGACGCTACGTGCCTTGGCAAGGGATGGGAGAACCGTGATAGCCTCTATTCATCAACCTAGCAGTGAAGTGTTTGAGTTGTTTGACCAATTGTACTTGCTTTCTAGCGGCAAAACTGTTTATTTTGGACAGGCTTCAGAGGCATATGAGTTCTTTGCACAAGCTGGTTTCCCTTGTCCTGCTTTGAGGAACCCTTCTGATCATTTCCTCAGGTGCATCAATTCTGACTTTGACAAAGTCAAGGCCACTCTCAAAGGGTCCATGAAACTGAGGTTTGAGGGAAGTGATGATCCTTTGGACAAGATCACTACTGCTGAAGCAATCAGAACTCTTATTGACTTCTACCGCACTTCTCAGCACTCTTATGCTGCAATACAAAAAGTGGATGAGATATCCAAAGTTAAGGGAACAGTGCTTGAAGCTGGAGGAAGTGAGGCTAGTTTCTTGATGCAGTCTTACACTTTGACCAAACGTTCCTTCACCAACATGTCAAGGGACTTTGGCTACTACTGGCTTAGGCTTGTTATCTACATTGTTGTCACTATCTGTATTGGAACCATTTATTTGAATGTGGGGACAGGCTACAACTCTATTCTGGCCAGAGGTTCTTGTGCATCTTTTGTTTTTGGTTTTGTGACCTTCATGTCAATTGGTGGATTCCCTTCATTTGTTGAAGACATGAAGGTTTTCCAAAGGGAGAGGCTTAATGGTCACTATGGTGTCACTGCATTTGTCATCAGCAACACATTATCTGCAATGCCCTTCCTGATTTTGATCACTTTTCTCTCTGGAACCATCTGCTACTTCATGGTTCGCCTACACCCTGGCTTTTGGCATTACCTCTTCTTTGTGCTGTGCCTTTATGCCAGTGTCACAGTGGTTGAAAGCTTAATGATGGCAATTGCCAGCATTGTCCCCAACTTCCTCATGGGCATTATTATTGGAGCAGGAATTCAGGGCATATTCATGTTGGTCTCAGGCTACTTTAGGCTTCCACATGATATCCCAAAGCCAGTCTGGCGTTACCCTATGTCATACATCAGTTTCCACTTCTGGGCACTGCAGGGTCAGTACCAGAATGATTTGAGGGGCTTGATTTTTGACAACCAGACACCAGACCTTCCAAAGATACCAGGAGAATACATCTTGGAAAAAGTCTTCCAAATTGATGTGAACAGATCGAAGTGGATTAATCTGAGTGTGATCTTCAGCATGATTGTGATCTACCGAATTATATTCTTTATCATGATAAAAATAAACGAAGATGTGACACCATGGGTGAGAGGATACATGGCTAGAAGGAGAATGCAGCAGAAGAGTGGAGCACAGAACACAACCATTGCACCTGATGTTCTCACTCAGTCACCATCTCTCAGAACCTATGTTTCCCATCCAACAAAATGA 2112 0.4493 MKNSEATTHDGMEIEATARPSGNGSTLPGLSPLSETLWREKANSEIIGDVSARLTWKDLTVMVTLSNGETQNVLEGLTGYAEPGTFTALMGPSGSGKSTLLDALSSRLAANAFLSGTILLNGRKAKLSFGTAAYVTQDDNLIGTLTVRETISYSARLRLPDNMPWEDKRALVESTIVAMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALARDGRTVIASIHQPSSEVFELFDQLYLLSSGKTVYFGQASEAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEGSDDPLDKITTAEAIRTLIDFYRTSQHSYAAIQKVDEISKVKGTVLEAGGSEASFLMQSYTLTKRSFTNMSRDFGYYWLRLVIYIVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVISNTLSAMPFLILITFLSGTICYFMVRLHPGFWHYLFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLRGLIFDNQTPDLPKIPGEYILEKVFQIDVNRSKWINLSVIFSMIVIYRIIFFIMIKINEDVTPWVRGYMARRRMQQKSGAQNTTIAPDVLTQSPSLRTYVSHPTK* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0831 703 CDD ABCG_EPDR 51 279 - -
Vra1g0831 703 Gene3D - 48 292 IPR027417 -
Vra1g0831 703 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 291 IPR027417 -
Vra1g0831 703 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 54 297 IPR003439 GO:0005524
Vra1g0831 703 MobiDBLite consensus disorder prediction 1 32 - -
Vra1g0831 703 Pfam ABC-2 type transporter 254 310 IPR043926 GO:0140359
Vra1g0831 703 Pfam ABC transporter 76 225 IPR003439 GO:0005524
Vra1g0831 703 Pfam ABC-2 type transporter 387 593 IPR013525 GO:0016020|GO:0140359
Vra1g0831 703 ProSitePatterns ABC transporters family signature. 197 211 IPR017871 GO:0005524
Vra1g0831 703 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 12 701 - -
Vra1g0831 703 PANTHER OS04G0528300 PROTEIN 12 701 - -
Vra1g0831 703 SMART AAA_5 83 254 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0831 Vra-Chr1 9754943 9760097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0831 84 285 Calmodulin-binding Proteins AT2G36910 31.100 1.26e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0831 K05681 - gmx:100816389 1333.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0831 1 9754943 9760097 Vra1g0831 1 9754943 9760097 ECH