Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0825 ATGGCAACCCGCAGATATGCTTTTGGAAGGGCTGATGAGGCCACTCATCCTGACTCCATGAGGGCCACTTTGGCTGAATTTGCCTCCACTTTCATCTTTGTCTTTGCTGGAGAAGGCTCTGGCCTTGCTTTGGTTAAGATTTACCAGGATTCAGCTTTCTCAGCTGGTGAACTGTTAGCACTTGCACTTGCCCATGCTTTTGCTCTATTTGCTGCTGTATCTGCTAGCATGCATGTATCAGGTGGCCATGTCAACCCGGCTGTGACATTCGGTGCTCTCGTTGGGGGGAGGATCTCTGTTGTTCGTGCAGTATACTACTGGGTTGCTCAACTTCTGGCTTCTATTGTGGCTGCTCTTGTGCTCAGGCTTGTCACTAATAACATGAGGCCATCAGGGTTCCGCGTGGCACCAGGTGTTGGAGTAGGACACATGTTTATTCTTGAGATTGTGATGACATTTGGGCTGATGTATACAGTATATGCTACTGCAATAGATCCCAAAAGGGGTGCTGTTAGCAATATCGCACCCTTGGCAATTGGGCTCATTGTTGGAGCAAACATCCTTGTTGGTGGGCCATTTGATGGAGCATGTATGAACCCTGCTCTGGCTTTTGGACCTTCCCTAGTGGGCTGGAGATGGCACCAGCACTGGATCTTCTGGGTGGGTCCATTGATTGGGGCAGCACTGGCAGCACTGGTGTATGAATATGCTGTGATCCCAATTGAACCTCCCCCACACCACCACCAGCCCTTGGCTTCTGAAGATTACTAA 771 0.4994 MATRRYAFGRADEATHPDSMRATLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVTFGALVGGRISVVRAVYYWVAQLLASIVAALVLRLVTNNMRPSGFRVAPGVGVGHMFILEIVMTFGLMYTVYATAIDPKRGAVSNIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWRWHQHWIFWVGPLIGAALAALVYEYAVIPIEPPPHHHQPLASEDY* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0825 256 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 256 - -
Vra1g0825 256 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g0825 256 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g0825 256 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g0825 256 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g0825 256 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g0825 256 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g0825 256 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g0825 256 TIGRFAM MIP: MIP family channel proteins 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g0825 256 Gene3D Glycerol uptake facilitator protein. 4 242 IPR023271 -
Vra1g0825 256 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra1g0825 256 PANTHER AQUAPORIN-8 1 256 IPR034294 -
Vra1g0825 256 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Vra1g0825 256 SUPERFAMILY Aquaporin-like 13 249 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0825 Vra-Chr1 9678462 9680227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0825 2 256 Major Intrinsic Protein MIP AT1G73190 70.833 2.30e-123 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0825 K09873 - gmx:100817450 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0825 1 9678462 9680227 Vra1g0825 1 9678462 9680227 ECH