Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0824 ATGAGCTTGGCCTTTACCATAAGCTTTTTATATGTGGTCTTGTTTGTGTCATTCAAATCCAACATGGTGTTGTGCGTTGAAATTGAGGAATTCTTTCCAGAAGAAAGAGATGCTTTGATACTCATAAGGGATTCTTTGAATTCATCTTTGAATTTGCATGGGAATTGGACAGGCCCTCCTTGTATAGACAGTCTGAGTAGGTGGATTGGAATCAGTTGCTCAAATTGGCATGTTGTTCAAATTGTTCTTGAAGGAGTTAACCTTAGTGGTTATCTGCCTCCCACATTTCTTCAAAACATAACTCTCTTGAGCCAACTTGACTTCAGAAATAATGCACTTTTTGGACCATTGCCAAGCCTCAAGAATTTGGTGTTTTTGGAACAAGCCCTTTTATCATTCAATCATTTCTCAGGGTCAATTCCTATGGAGTATGTTGAACTTACCAGTCTAAGAGTGTTGGAGCTGCAAGAGAATTACTTACATGGTCAAATTCCACCCTTTGATCAACCATCATTGACAAGTTTCAATGTGTCATATAATCATCTGTCAGGGCCTATTCCTGAAACTTCTGTGCTGATGAGGTTCCCAGAGAGTTCTTATGAAAATAATTCAGATCTTTGTGGAGAGCCATTGGATAAGTTATGTCCTATTCAACCTCCTGCCCCATCTCCAGCACCATTTTCTGCACCACCTCCTTTTCCTATGCCTCCAATTCCAGCAGTGAAGCCAAATAACAGGTTTCAAGCATGGACTGTTGCTGTGATTGGTGTTGCAGCTGCACTTATTCTTCTTTCTCTGATCATATTTATTGCTTTCTTGTTTCGTAAAAGACAAACAAGTGGAAAAGAAGTAAGAAGAGATGATTCAGCTGGGCATGCTTTTGGGGCATGGGCAAAGAAGATGGTGGCTTATGCTGGGGGCAGTGATGTTTCTGAGAGATTAGGCAGATTGGAATTTTCTAACAAGAAACTGCCAGTATTTGACTTGGATGATTTATTAAGGGCATCAGCAGAAATTCTAGGAAGAGGGAACTTAGGTATTACGTACAAAGCAACACTTGAAACTGGAACTGTTGTTGCAGTGAAGAGACTTAACCACATGAATGAACTGAGCAAGAAGGAATTTCTCCAGCAGATCCAATTGCTAGGACAGATGAAGCATGAAAATATAGCAGAAATAATCTCCTTTTATTATTCAGAGGAGCAAAAGTTGGTCATATATGAATTTACCTCTGATGGCACTTTGTTTGAACTACTACATGAGGGTAGAGGAATTGGAAGAATGGCACTTGATTGGACCACAAGACTTTCTATCATCAAAGACATAGCAAAGGGTCTTCTTTTCCTTCATCATTCCTTGCCATCTCAAAAGGTTCCTCATGCCAACCTCAAGTCATCCAATGTCCTAATCCATCAAGATAGTAAAGGGTATCATTCCAAGCTCACAGACTATGGTTTCTTTCCTCTACTCCCAGCCAAACAAAATGCAGAAAAACTAGCCATAAGGAGGTCACCAGAATTTGTTCAAGGGAAGAAGCTAACACGCAATGCTGATGTTTATTGCTTTGGCATCATTGTGCTAGAGATTGTAACCGGCAAAATCCCTGGCCATATCATAGGTGAAATTGAAGAAACTACCAATGATCTTTCAGATTGGGTAAGAACTGTGGTGAACAATGATTGGTCCACAGACATATTGGATTTAGAAATACTTGCAGAAAAAGAAGGGCATGATGCAATGTTAAAGCTAACAGAGTTAGCTCTAGAGTGTACTGATATAACACCAGAGAAGAGGCCTAAAATGAGTGTAGTGTTGATGAGAATAGAAGAGATAGAGAAAATGAAAAAGGAGAATGACTAA 1860 0.3962 MSLAFTISFLYVVLFVSFKSNMVLCVEIEEFFPEERDALILIRDSLNSSLNLHGNWTGPPCIDSLSRWIGISCSNWHVVQIVLEGVNLSGYLPPTFLQNITLLSQLDFRNNALFGPLPSLKNLVFLEQALLSFNHFSGSIPMEYVELTSLRVLELQENYLHGQIPPFDQPSLTSFNVSYNHLSGPIPETSVLMRFPESSYENNSDLCGEPLDKLCPIQPPAPSPAPFSAPPPFPMPPIPAVKPNNRFQAWTVAVIGVAAALILLSLIIFIAFLFRKRQTSGKEVRRDDSAGHAFGAWAKKMVAYAGGSDVSERLGRLEFSNKKLPVFDLDDLLRASAEILGRGNLGITYKATLETGTVVAVKRLNHMNELSKKEFLQQIQLLGQMKHENIAEIISFYYSEEQKLVIYEFTSDGTLFELLHEGRGIGRMALDWTTRLSIIKDIAKGLLFLHHSLPSQKVPHANLKSSNVLIHQDSKGYHSKLTDYGFFPLLPAKQNAEKLAIRRSPEFVQGKKLTRNADVYCFGIIVLEIVTGKIPGHIIGEIEETTNDLSDWVRTVVNNDWSTDILDLEILAEKEGHDAMLKLTELALECTDITPEKRPKMSVVLMRIEEIEKMKKEND* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0824 619 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
Vra1g0824 619 ProSiteProfiles Protein kinase domain profile. 334 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0824 619 SUPERFAMILY L domain-like 34 196 - -
Vra1g0824 619 Gene3D Ribonuclease Inhibitor 32 217 IPR032675 -
Vra1g0824 619 Gene3D Phosphorylase Kinase; domain 1 306 409 - -
Vra1g0824 619 PANTHER POLLEN RECEPTOR-LIKE KINASE 4 11 614 - -
Vra1g0824 619 SUPERFAMILY Protein kinase-like (PK-like) 338 608 IPR011009 -
Vra1g0824 619 Pfam Protein kinase domain 337 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0824 619 Gene3D Transferase(Phosphotransferase) domain 1 411 619 - -
Vra1g0824 619 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0824 Vra-Chr1 9673273 9675650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0824 55 617 Receptor kinase-like Gene Family AT1G68400 34.043 4.83e-105 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra1g0824 Pkinase 7.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0824 - - gmx:102668068 1001.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0824 1 9673273 9675650 Vra1g0824 1 9673273 9675650 ECH