Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0820 ATGACTATATCAGTTCAATCATGTATACATTTTTCATGTTACATTTTTCTGGTTTTGTTCTTCTTCCTTGTTCACACAAGCTCACAATCTTTGAATGATCAAGAGCATGCAGTTTTGCTTAATATAAAGCAATATCTTGAAGACCCTTCTTTCCTCTCCCATTGGAATTCAACTTCCTCTCACTGTTCATGGCCAGAGATCACATGCACCACTGGCTCAGTCACTTCTCTCACCCTCTCCCATTCCAACATCAACAAAACCATACCATCCTTCATATGTGACCTCACCAACCTCACACATCTTGACTTCAGCTTCAACTTCATCCCTGGTGACTTCCCCACACCCCTCTACAACTGCTCCAAGTTGGAGTACCTAGATCTTTCAGGGAACAACTTTGATGGCCAGGTTCCTCGTGAGATTGACCGTTTGGGTGCTAATTTGCAATATCTCAACCTTGGTTCTACCAATTTCCATGGTGATGTTCCTGCCAGTGTTGGAAATTTAAAGCAACTGAGACAGCTTAAACTTCAGTTTTGCTTGTTGAATGGCACTGTTGCTGCTGAGATTGATAGCTTGCCCAATCTTGAGTACTTGGACTTGTCCTCTAACTTTTTGTTTCCTAAATGGAAGTTGCCTTGGAACTTGACCAAGTTCAACAAATTGAAGGTGTTTTATTTGTATGGCACCAACTTGGTTGGGGAAATCCCAGATAACATTGGAGATATGGTGGCTTTGGAGAAGCTGGATGCATCACAAAATGGCTTAACCGGTGGAATTCCAAGTGGTTTATTCTTGCTGAAGAATCTGACCTCACTCTATCTTTTTCAAAACAGCCTCTCAGGGGAGATACCAAGTGTGGTTGATGCATTAAACTTGGTCAACCTTGATCTTGCAAGGAATAATCTCACAGGGAAAATACCAGATGATTTTGGAAAACTGCAACAGCTCTCATGGTTGAGTTTGTCTTTGAATAGCTTGTCAGGTGTGATACCACAAAGCTTGGGCAGTCTTCCAGCTCTCATTGATTTTCGCGTGTTTTTCAACAAGTTATCAGGTATTCTTCCTCCTGATTTTGGCCGTTACTCAAAGCTTAAAACCTTTTTGATTGCATCTAATAATTTTACGGGGAAGTTACCGGATAACCTGTGCTATCATGGGATGTTACTTAACTTGTCTGTTTATGAAAATAAGCTGAGTGGTGAGTTGCCAGAATTTCTTGGAAATTGCAGTAGTTTACTGGACCTGAAAATTTACGAAAACGAGTTTTCTGGTAACATTCCTAATGGTCTTTGGACATCTTTCAATTTGTCAAATTTCATGGTGAGCCATAACAAGTTCACTGGTGAGCTTCCTAAAAGGCTATCTTGGAATGTTTCGAGGTTTGAGATAAGTTACAATCAGTTTTCTGGTGGAATTCCAAATGGAGTATCATCATGGACTAATTTGGTAGTGTTTGATGCCAGTAAAAACAATTTCAATGGAAGTATTCCAAAAGAGCTAACAGCTCTTCCTAAGTTAATAACCTTGTTGCTTGATCAGAACCAACTCACTGGGGCACTTCCATCAGAGATAATATCATGGAAATCCTTGGTAACTCTAAATTTGAGCCAAAACCAACTCTCGGGACAAATCCCTCATGCAATTGGTCAGTTACCTGTCCTTAGTCAGCTTGATCTATCAGAAAATGAATTCTCTGGCCAAGTTCCTTCTCTATCTACCAGAGTCACCAATCTCAATTTGTCTTATAATCATTTAACTGGGAGAATTCAAAGGGAGTTTGAAAATTCTGCGTATGCTGGTAGCTTTTTGGGCAATTCTGGTCTTTGTTCTGGCAACCCAGCACTGAACCTTACCATATGCAATTCTGGCCTTCAAAGAACAAGCAAGGACTCATCTTGGTCTATTGGTTTGATTATATGCTTGGCTGTAGCAGCCTTGTTACTGGCCATTTTAGCATCACTTTTGTTTATTAGAATTCAAAGAAAGAGAAAGAAAGGATTAGATAACTCTTGGAAGCTCGTTTCCTTTCAGAGGGTGAATTTCACAGAATCAACCATTGTCTCATCAATGACAGAACAAAACATTATTGGTAGTGGTGGATATGGTACAGTATACCGCATTGATGTTGGTTCAGACTATGTTGCTGTGAAAAAGATTTGGAATAACAGAAAGTTAGACAAAAAGCTTGAGAGCTCCTTCCGTGCAGAAGTTAGAATATTGAGCAACATTCGTCATACCAACATTGTAAGGTTGATGTGTTGTATCTCTAATGAAGACTCTATGCTCCTTGTATATGAGTATCTGGAAAATCTCAGCCTAGATAAGTGGCTGCATAAGAGTGTCAAGCCAGGTTCAGCCAATAAAGTGGTCCTTGATTGGCCAAAGAGGTTGAAAATAGCAATAGGGGTTGCTCAGGGTTTGAGCTACATGCATCATGACTGTTTACCACCTGTTGTTCATAGAGATATAAAAACAAGCAACATCCTTCTGGATTCTCAGTTCAATGCGAAAGTTGCTGATTTTGGACTAGCTAAGTTGTTAATCAAGCCAGAGGAACTAAGCAGCATGTCAGCTGTTATTGGCTCATTTGGCTATATTGCTCCAGAATTTGTGCAATCAACCAGAGTTAGTGAGAAGATTGATGTGTTCAGCTTTGGAGTAGTGCTATTAGAACTGACAACAGGTAAAGAAGCAAGTTATGGAGACCAACAGTCATCTCTTTCAGAGTGGGCATGGCGTCACATTCTGATTGGAGACAATGTTGAAGAATTGCTAGACAAAAATGTCACTGAAGCCAGTTACATAAATGAAATGTGCACTGTTTTCAAACTTGGTGTCATGTGCACTGCAACACTGCCTACCAGTAGGCCTTCCATGAAGGATGCCCTACAAATATTGCAAAGCTTAGCAGAACCATTATTTTATGCAGAGAAGGGCTTTGACCACTACTATGATGCTAGGCCCCTTCTTAAGAGTTCAAAGGAAGCTATATTGAATGTTGATCATGATAGTGAATGA 3018 0.4013 MTISVQSCIHFSCYIFLVLFFFLVHTSSQSLNDQEHAVLLNIKQYLEDPSFLSHWNSTSSHCSWPEITCTTGSVTSLTLSHSNINKTIPSFICDLTNLTHLDFSFNFIPGDFPTPLYNCSKLEYLDLSGNNFDGQVPREIDRLGANLQYLNLGSTNFHGDVPASVGNLKQLRQLKLQFCLLNGTVAAEIDSLPNLEYLDLSSNFLFPKWKLPWNLTKFNKLKVFYLYGTNLVGEIPDNIGDMVALEKLDASQNGLTGGIPSGLFLLKNLTSLYLFQNSLSGEIPSVVDALNLVNLDLARNNLTGKIPDDFGKLQQLSWLSLSLNSLSGVIPQSLGSLPALIDFRVFFNKLSGILPPDFGRYSKLKTFLIASNNFTGKLPDNLCYHGMLLNLSVYENKLSGELPEFLGNCSSLLDLKIYENEFSGNIPNGLWTSFNLSNFMVSHNKFTGELPKRLSWNVSRFEISYNQFSGGIPNGVSSWTNLVVFDASKNNFNGSIPKELTALPKLITLLLDQNQLTGALPSEIISWKSLVTLNLSQNQLSGQIPHAIGQLPVLSQLDLSENEFSGQVPSLSTRVTNLNLSYNHLTGRIQREFENSAYAGSFLGNSGLCSGNPALNLTICNSGLQRTSKDSSWSIGLIICLAVAALLLAILASLLFIRIQRKRKKGLDNSWKLVSFQRVNFTESTIVSSMTEQNIIGSGGYGTVYRIDVGSDYVAVKKIWNNRKLDKKLESSFRAEVRILSNIRHTNIVRLMCCISNEDSMLLVYEYLENLSLDKWLHKSVKPGSANKVVLDWPKRLKIAIGVAQGLSYMHHDCLPPVVHRDIKTSNILLDSQFNAKVADFGLAKLLIKPEELSSMSAVIGSFGYIAPEFVQSTRVSEKIDVFSFGVVLLELTTGKEASYGDQQSSLSEWAWRHILIGDNVEELLDKNVTEASYINEMCTVFKLGVMCTATLPTSRPSMKDALQILQSLAEPLFYAEKGFDHYYDARPLLKSSKEAILNVDHDSE* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0820 1005 Gene3D Phosphorylase Kinase; domain 1 670 767 - -
Vra1g0820 1005 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Vra1g0820 1005 SMART LRR_sd22_2 192 217 - -
Vra1g0820 1005 SMART LRR_sd22_2 95 127 - -
Vra1g0820 1005 SMART LRR_sd22_2 266 292 - -
Vra1g0820 1005 Pfam Leucine rich repeat 74 132 IPR001611 GO:0005515
Vra1g0820 1005 Pfam Leucine rich repeat 504 563 IPR001611 GO:0005515
Vra1g0820 1005 Pfam Leucine rich repeat 291 350 IPR001611 GO:0005515
Vra1g0820 1005 Pfam Protein kinase domain 692 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0820 1005 CDD STKc_IRAK 696 969 - -
Vra1g0820 1005 Gene3D Ribonuclease Inhibitor 146 208 IPR032675 -
Vra1g0820 1005 ProSiteProfiles Protein kinase domain profile. 690 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0820 1005 Gene3D Transferase(Phosphotransferase) domain 1 768 978 - -
Vra1g0820 1005 SUPERFAMILY Protein kinase-like (PK-like) 681 966 IPR011009 -
Vra1g0820 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672|GO:0006468
Vra1g0820 1005 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 12 998 - -
Vra1g0820 1005 SUPERFAMILY L domain-like 261 589 - -
Vra1g0820 1005 ProSitePatterns Protein kinases ATP-binding region signature. 696 718 IPR017441 GO:0005524
Vra1g0820 1005 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 12 998 - -
Vra1g0820 1005 Gene3D Ribonuclease Inhibitor 33 145 IPR032675 -
Vra1g0820 1005 SMART serkin_6 690 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0820 1005 SUPERFAMILY L domain-like 46 375 - -
Vra1g0820 1005 Gene3D Ribonuclease Inhibitor 209 344 IPR032675 -
Vra1g0820 1005 Gene3D Ribonuclease Inhibitor 345 621 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0820 Vra-Chr1 9627569 9631340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0820 31 992 Receptor kinase-like Gene Family AT5G25930 51.031 0.0 940
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra1g0820 Pkinase 1.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0820 - - gmx:100813894 1646.71