Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0818 ATGGCACCCTCAACCCCTCAAGTCATCACCTGCAAAGCTGCTGTGGCATGGGGAGCTGGGGAGCCACTGGTGATGGAGGAAGTGGAGGTCAGCCCTCCCCAACCAATGGAGATTAGGATTAAGGTTGTCTCNACCTCTCTCTGCCGTAGTGATCTTTCTGCTTGGGAGTTTCATGCCATATTTCCTCGCATATTTGGCCATGAAGCATCAGGGATTGTTGAGAGTGTGGGACTAGGAGTGACTGAATTCAAAGAGGGTGACCATGTGCTAACAGTATTCATTGGAGAATGCATGACATGCAGACAGTGTACATCTGGAAAAAGTAACATTTGTCAAGTTTTAGGATTGGAAAGAAGGGGTTTAATGCACAGTGATCAGAAGACACGCTTCTCAGTAAAAGGGAAGCCTGTTTATCATTATTGTGCTGTTTCAAGTTTCAGTGAATATACAGTAATCCATTCCGGATGTGCAGTGAAAATCAGCCCCCATGCACCTCTTGAGAAAATTTGCCTTCTGAGCTGTGGGGTTGCTGCAGGTCTGGGTGCAGCATGGAATGTTGCCGATGTGTCAAAAGGATCAACTGTGGTGATTTTTGGTCTTGGAACTGTAGGCCTATCCGTTGCTCAAGCTGCAAAACTAAGAGGTGCATCTAGAATAATTGGTGTTGACAACAACCCACAGAAGTGTGAAAATGCTAAGGCTTTTGGGGTTACAGAAGTTGTTGACCCGAATTCCTGTGAAGAACCTATTGCTCAGGTTATTAAGCGGATTACTGATGGCGGTGCAGATTTCTCTTTTGAATGTGTTGGTGACACTGATATGATAACCACTGCATTGCAGTCATGCTGTGACGGATGGGGTCTGACTGTAACACTTGGGGTGCCAAAGGCGAAGCCTGAGATGTCAGCTCATTATGGACTACTACTAACGGGAAGAACATTGAAAGGATCTCTATTTGGAGGATGGAAACCAAAATCTGATCTTCCTTCATTAGTAGAGAAGTATGTCAACAAGGAAATCCAGATTGATGACTACATAACACACAATTTGCCATTTGATGACATCAACAAAGCTTTCAATCTCATGAAGGAAGGAAAATGTCTGCGTTGTGTTATCCACATGCCAAGATAA 1131 0.4447 MAPSTPQVITCKAAVAWGAGEPLVMEEVEVSPPQPMEIRIKVVSTSLCRSDLSAWEFHAIFPRIFGHEASGIVESVGLGVTEFKEGDHVLTVFIGECMTCRQCTSGKSNICQVLGLERRGLMHSDQKTRFSVKGKPVYHYCAVSSFSEYTVIHSGCAVKISPHAPLEKICLLSCGVAAGLGAAWNVADVSKGSTVVIFGLGTVGLSVAQAAKLRGASRIIGVDNNPQKCENAKAFGVTEVVDPNSCEEPIAQVIKRITDGGADFSFECVGDTDMITTALQSCCDGWGLTVTLGVPKAKPEMSAHYGLLLTGRTLKGSLFGGWKPKSDLPSLVEKYVNKEIQIDDYITHNLPFDDINKAFNLMKEGKCLRCVIHMPR* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0818 376 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 165 338 IPR036291 -
Vra1g0818 376 SUPERFAMILY GroES-like 5 184 IPR011032 -
Vra1g0818 376 PANTHER ALCOHOL DEHYDROGENASE 5 374 - -
Vra1g0818 376 Gene3D - 14 369 - -
Vra1g0818 376 PANTHER ALCOHOL DEHYDROGENASE-LIKE 6 5 374 - -
Vra1g0818 376 SUPERFAMILY GroES-like 325 373 IPR011032 -
Vra1g0818 376 Gene3D - 179 317 - -
Vra1g0818 376 CDD alcohol_DH_plants 9 373 - -
Vra1g0818 376 Pfam Zinc-binding dehydrogenase 203 326 IPR013149 -
Vra1g0818 376 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 66 80 IPR002328 GO:0008270|GO:0016491
Vra1g0818 376 Pfam Alcohol dehydrogenase GroES-like domain 36 155 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0818 Vra-Chr1 9615563 9621141 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0818 37 174 Monolignol Biosynthesis Gene Families AT4G37990 27.273 6.68e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0818 K00001 - gmx:100819938 722.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0818 1 9615563 9621141 Vra1g0818 1 9615563 9621141 ECH