Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0817 ATGGCAATTAGATCACGTTCCTCTTCCTTCACCTATGATGTTTTCCTCAGTTTCAGAGGGGAAGACACACGCCATGGTTTTACTGGCCACCTCTACAAAGCCCTTCATGACAGGGGAATCTACACCTTCATTGACGATGAGGAGCTTCAGAGAGGGGAGGAAATAACACCAGCACTTGTGAAGGCAATTGAAGAGTCCAGGATTGCCATCATTGTGCTNTCTATAAACTATGCTTCTTCCTCATTTTGCTTAAATGAACTTGAGTACATCCTTGAGTGCTTTAACAAAAAATATATGTTGGTTTTGCCAGTTTTCTTTAAGATAGATCCTTCTGATGTTAGACACCAGAAAGGTAGTTATGGAGAAGCATTAGCTAAGCATGAGCAAAGGTTCAACCATAGCATGGAGAAGTTGGAGAATTGGAAGAAGTCTTTGCATCAAGTAGCTAACTTGTCTGGCTTTCATTTGAAACATGGAGATGGATATGAACATGAGTTTATTGGAAGGATAGTTGAGTTGGTATCCAGCAAGATTAATCATTCTCCCTTACCTGTTGCGGATTACCCAGTTGGACTAGAGTCACAANCACTGGCAGTAAGGAAGCTTTTGGATGTTGGATCTGATGATGTCCACATGATAGGAATCTATGGAACCGGTGGGATAGGAAAATCAACACTTGCTTTAGCAGTTTATAATTTGATTGTTCACCATTTTGANTGTTCGTGTTTTCTTCAAAACGTGAGAGAAAAATCAAACAAGCATGGGTTACAACACCTCCAAAGCATCCTTCTTCGGGAAATGCTTGGAGAGAAGGAAGCAAACTTTGNTAGTGTAGAACAAGGAGCTTCAGTGATACACCATAGGTTTCAAAGAAAGAAGGTTATCTTGATTTTGGATGATATTGACAAATACGAGCAATTGCAGGCTATTGTTGGAAGACCTTGTCTTTTTGGTCCTGGCAGCAGAGTCATCATCACTACTCGGGACAAACAATTATTGTCATCTTATGGGGTTATAAGAACGTATGAGGTGAATTTATTGGATAAGAACAATGCTCTTGACTTGCTTTCATGGAAAGCTTTTAAAACAAAAGAATTTGATGCAAGTTATAATGAGGTCTTGAATGATGTAGTGATTTATGCTTATGGGCTTCCATTGGCTTTGGAAGTGATAGGTTCCAACTTGTTTGGAAAAAGTATAGAAGAATGGAAATCTGCTATCAAACAGTATAAAAGAATTCCTAATAATCAAATCCTAGAGATACTTAAAGTGAGCTTTGATTCTNTGGAGGAAGAAGAGAAGAGTGTTTTTCTTGATATTTGTTGGTTAAATAGATATCCCTTGTCAAAGGTTGAAGATTTACTTCTTGCTCATTATGGCGATTGCATGAAATATCATATTGGGGTGTTGGTTGACAAATCTCTTATAAAGTTGAGTCGGTATACTCTAGAAACTAGAATTGCATTGCATAGCTTGATCCAGGATATGGGTAAAGAAATTGTCAGGCAAGAATCACCAAAAGATCCAGGGAAGCGCAGTAGATTATGGTTACCGGAAGATATAATTCAAGTTTTGGAAGATGACAAGGATTTCATGAATCTTAGAGTATTAAATTTTGATTTCTGCAAATGTTTAACACAGATACCTGACATGTCTGTTCTCCAAAATTTGGAAGAACTTTCATTTAAATATTGTGTGAATCTAATTACAGTTCACGACTCAGTTGGTTTGCTGGATAAACTTAAAACATTGAGTGCTTTTAGCTGCGAAAAGCTTAGGAGTTTCCCGCCTATCAAGTTGACCTCTCTTGAAAAACTTGATCTTTCAGGTTGTGACAGTCTGAAGGGTTTTCCAGAAGTATTAGTTAAGATGGAAAACATAAGGGAACTTAATTTGGAGGGCTGTCCCATAACAGAATTGCCAATTTCATTTCAAAATCTTACCGGGCTTCCGTCATTAGAAATGTTTTTTTCAACTAGTGCAATTGTTAAGGTGCCCAGTAGCATTATCATGATGCCAAAACTGGCTGATATCGACGCCAGAGGATTGAAAGGGTTGCAATGGCTGAAACATGAAGAGGGTGAAGAACAAATGGGGGCAGTAGTAGTACCTTCAAAGATAGAATTTCTTACTGCTTCAAATTGCAACCTTTATGATGATTTCTTTTCGATAGATTTCACAAGGTTTGCTCATGTGAAGAATTTATGGTTACCTAAGAATAATTTTACCATCCTTCCTGAATGTCTGAAACAATGCCAATTTTTATATGATCTTGATGTGAGTGATTGCAAGCATCTTCGGGAAATTAGAGGCATTCCACCAAACTTAAAGCGTTTCTTTGCTATAAACTGTAAATCCTTGGCTTCCTCGAGTAAACGCATGCTCCTAAAGCAGGAACTGCACGAGGCTGGAAACACTGTGTTTTGTTTGCCAGGATTTAGTATTCCAAAGTGGTTCAATCACCAGAACCGGGGAACTTCAATTTCTTTCTGGTTTCGTAATAAGTTCCCTGACAAAGTTCAGTGTGTTCTTGTTGCACCTATGCAGGACAAATTTTTTCGTCCCAGGGTTTTCATCAATGGCAAACAATATACCTCGTATGGTCACTTTGGCTTGACAGGGAATCATCATAAATATCTTTTTGATCTGCGAGAGGCAAGTTTCAAAACAAAAAGTCCGTATAGGGTGCCTTTTGATAGTGAATGGAAACATGCAAAGCTTTCATTTCCACCGGGAACATATACCTCTTTTGACCGTGCAAAAATGGGAATCCACATAGCCAAACAGGAAAATAGCATGGAGGATGTTAGATTCACTGATCCTTGCAGCAAGAGAAAAACAGATGTTGATATCAGCAGTTCTGACTCAGAATCTATACCAGTTGCTAAAGAGCACAGGTTTCTGGATTTTGACCTTTGA 2919 0.384 MAIRSRSSSFTYDVFLSFRGEDTRHGFTGHLYKALHDRGIYTFIDDEELQRGEEITPALVKAIEESRIAIIVLSINYASSSFCLNELEYILECFNKKYMLVLPVFFKIDPSDVRHQKGSYGEALAKHEQRFNHSMEKLENWKKSLHQVANLSGFHLKHGDGYEHEFIGRIVELVSSKINHSPLPVADYPVGLESQXLAVRKLLDVGSDDVHMIGIYGTGGIGKSTLALAVYNLIVHHFXCSCFLQNVREKSNKHGLQHLQSILLREMLGEKEANFXSVEQGASVIHHRFQRKKVILILDDIDKYEQLQAIVGRPCLFGPGSRVIITTRDKQLLSSYGVIRTYEVNLLDKNNALDLLSWKAFKTKEFDASYNEVLNDVVIYAYGLPLALEVIGSNLFGKSIEEWKSAIKQYKRIPNNQILEILKVSFDSXEEEEKSVFLDICWLNRYPLSKVEDLLLAHYGDCMKYHIGVLVDKSLIKLSRYTLETRIALHSLIQDMGKEIVRQESPKDPGKRSRLWLPEDIIQVLEDDKDFMNLRVLNFDFCKCLTQIPDMSVLQNLEELSFKYCVNLITVHDSVGLLDKLKTLSAFSCEKLRSFPPIKLTSLEKLDLSGCDSLKGFPEVLVKMENIRELNLEGCPITELPISFQNLTGLPSLEMFFSTSAIVKVPSSIIMMPKLADIDARGLKGLQWLKHEEGEEQMGAVVVPSKIEFLTASNCNLYDDFFSIDFTRFAHVKNLWLPKNNFTILPECLKQCQFLYDLDVSDCKHLREIRGIPPNLKRFFAINCKSLASSSKRMLLKQELHEAGNTVFCLPGFSIPKWFNHQNRGTSISFWFRNKFPDKVQCVLVAPMQDKFFRPRVFINGKQYTSYGHFGLTGNHHKYLFDLREASFKTKSPYRVPFDSEWKHAKLSFPPGTYTSFDRAKMGIHIAKQENSMEDVRFTDPCSKRKTDVDISSSDSESIPVAKEHRFLDFDL* 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0817 972 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 543 822 IPR044974 GO:0006952
Vra1g0817 972 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 541 IPR044974 GO:0006952
Vra1g0817 972 Gene3D Ribonuclease Inhibitor 520 616 IPR032675 -
Vra1g0817 972 Pfam TIR domain 12 181 IPR000157 GO:0007165
Vra1g0817 972 Gene3D - 182 340 IPR027417 -
Vra1g0817 972 Gene3D Ribonuclease Inhibitor 617 802 IPR032675 -
Vra1g0817 972 ProSiteProfiles TIR domain profile. 10 178 IPR000157 GO:0007165
Vra1g0817 972 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 15 541 - -
Vra1g0817 972 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 543 822 - -
Vra1g0817 972 Pfam NB-ARC domain 201 412 IPR002182 GO:0043531
Vra1g0817 972 Gene3D - 5 181 IPR035897 -
Vra1g0817 972 PRINTS Disease resistance protein signature 212 227 - -
Vra1g0817 972 PRINTS Disease resistance protein signature 288 302 - -
Vra1g0817 972 PRINTS Disease resistance protein signature 381 395 - -
Vra1g0817 972 PRINTS Disease resistance protein signature 598 614 - -
Vra1g0817 972 Gene3D - 346 430 IPR042197 -
Vra1g0817 972 SUPERFAMILY L domain-like 508 809 - -
Vra1g0817 972 SMART till_3 11 151 IPR000157 GO:0007165
Vra1g0817 972 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 154 IPR035897 -
Vra1g0817 972 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 440 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0817 Vra-Chr1 9610761 9615163 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0817 7 686 WRKY Transcription Factor Family AT4G12020 27.226 4.64e-50 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0817 - - vra:106764825 1124.38