LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra1g0816	ATGGCAATTCGATCACGTTCCTCTTCCTTCACCTATGATGTTTTCCTCAGCTTCAGAGGGGAAGACACACGCCATGGTTTTACAGGCCACCTCTATAAAGCCCTTCATGACAGGGGAATCTACACCTTCATTGACGATGAGCAGCTTCAGAGAGGGGAGGAAATAACACCATCACTTGTGAAGGCAATTGAAGAGTCCAGGATTGCCATCACTGTGCTCTCTATAAACTATGCTTCTTCCTCATTTTGCTTAAATGAACTTGAGTACATCCTTGAGTGCTTTAACAAAAAATATATGTTNGTTTTGCCAGTTTTCTTTAAGATAGATCCTTCTGATGTTAGACACCAGAAAGGTAGTTATGGAGAAGCATTAGCTAAGCATGAGCAAAGGTTCAACCATAGCATGNANAAGTTGGAGAACTGGAAGAAGGCTTTGCATCAAGTAGCTAACTTGTCTGGCTTTCATTTGAAACATGGAGATGGATATGAACATGAGTTTATTGGAAGGATAGTTGAGTTGGTATCCAGCAAGATTAATCACGCTCCTTTACCAGTTGCGGATTACCCAGTTGGACTAGAGTCACAAGCACTGGCCGTAAGGAAGCTTTTGGATGTTGGATCTGATGATGTCCACATGATAGGAATCTATGGAATCGGCGGGATAGGAAAATCAACACTTGCTTTAGCAGTTTATAATTTGATTGTTCACCATTTTGATTGTTCGTGTTTTCTTCAAAACGTGAGAGAAAAATCTAGCAAGCATGGGCTACAACACCTCCAAAGCATCCTTTTTCGGGAAATGCTTGGAGAGAAGGAAGCAAACTTTGCAAGTGTAGAACAAGGAGCTTCAGTGATACACCATAGGTTTCAAAGAAAGAAGGTTATCTTGATTCTGGATGATGTTGACAAATACGAGCAATTGCAGGCTATTGTTGGAAGACCTTGTCTTTTTGGTCCTGGCAGCAGAGTCATCATCACTACTCGGGACAAACANTTATTGTCATCTTATGGGGTTATAAGAACGTATGAGGTGAACTTATTGGATAAGAACAATGCTCTTGACTTGCTTTCATGGAAAGCTTTTAAAACAAAANAAATTGATGCAAGTTATAATGAGGTNTTGAATGATGTAGTGATTTANGCTTATGGGCTTCCATTGGCTTTGGAAGTGATAGGTTCCAACTTGTTTGGAAAAAGTATAGAAGAATGGAAATCTGCTATCAAACAGTATAAAAGAATTCCTAATAATCAAATCCTAGAGATACTTAAAGTGAGCTTTGATTCTTTGGAGGAAGAAGAGAAGAGTGTTTTTCTTGATATTTGTTGGTTAAATAGATATCCCTTGTCAAAGGTTGAAGATTTACTTCTTGCTCATTATGGCGATTGCATGAAATATCATATTGGGGTGTTGGTTGACAAATCTCTTATAAAGTTGAGTCGGTATACTCTCGAAACTAGAATTGCAATGCATAGCTTGATCCAGGACATGGGTAAAGAAATTGTCAGGCAAGAATCACCAAAAGATCCAGGGAAGCGCAGTAGATTATGGTTACCGGAAGATATAATTCAAGTTTTGGAAGATGACAAGGGAACNAGTGAAATTGANATCATATGTCTGGATNNTCCAAAATNTGACAAAGAAGCAATAGTAGAATTCAATACAAAAGCATTCAAGACGATGAAAAACCTCAAAACACTTATCCTTAGGAATGTTAATTTTTCCGAAGGTCCCGAACACCTTCCAAATAGTTTGAGAGTGTTGGAATGGTTGGGATATCCTTCACATTGTTTACCATCTGATTTTCATCCCAAAAAACTTGTTCTATGCAAGTTATCCCGTAGCTCCATTTCATCCCTTGAGTTTTCAAAGGATTTCATGAATCTTAGAGTATTGAATTTTGATTGGTGCAAATGTTTAACACAGATACCTGACATGTCTCTTCTCCAAAATTTGGAAGAACTTTCATTTAAATATTGTGTGAATCTAATTACAGTTCACGACTCAGTTGGTTTTCTGGATAAACTTAAAACATTGAATGCTTTTAGCTGCGAAAAGNTTAGTTGTTTCCCGCCTATGAAGTTGACCTCTCTTGAAAAACTTGAGCTTTCACTTTGTTACAGTCTGAAGGGTTTTCCAGAAGTATTAGTTAAGATGGAAAACATAAGGGAACTTAATTTGGAGGGCTGTCCCATAACAGAATTGCCAATTTCATTTCAAAATCTTACCGGGCTTCCGTCATTAGAAATGTTTTTTTCAACTAGTTCAATTGTTAAGGTGCCCAGTAGCATTATCATGATGCCAAAACTGGCTCGTATCTTCGCCAGAGGATTGAAAGGGTTGCAATGGCTAAAACAGGAAGAGGGTGAAGAACAAATGGGGCCAGTAGTAGTACCTTCAAAGGTAGAATGGCTTACTGCCTCAAATTGCAACCTCTATGATGATTTCTTTTCGATAGATTTCGCAAGGTTTTCTCATGTGAAGAATTTATGGCTACCTAAGAATAATTTTACCATCCTTCCTGAATGTTTGAAACAATGCCAATTTTTATCGTATCTTGATGTGAGTTATTGCAAGCATCTTCGGGAAATTAGAGGCATTCCACCAAACTTAAAGCTTTTCTCTGCAATAAACTGTGAATCCTTGGCTTCCTCGAGTAAACGCATGCTCGTAAAGCAGGAACTGCACGAGGCTGGAAACACCATGTTTTGTTTGCCAGGATTTAGTATTCCAAAGTGGTTCAATCACCAGAACCGGGGAACTTCAATTTCTTTCTGGTTTCGTAATAAGTTCCCTGACAAAGTTCAGTGTGTTCTTGTTGCACCTATGCTGCATAATTCTTTTCATCCCACGGTTTTCATCAATGGCAAAGAATATACCTTGTATGGTCACTTTTGCTGGACAGGGAATCATCATAAATATCTTTTTGATCTGCGAGAGGCAAGTTTCAGAATAAGACCGTATGAGGTGCCTTTTGATAGTGAATGGAACCATGCAAAGCTTACATTTCCACCCGGAACATATACCTCTTTTGACCGTGCAAAAATGGGAATCCACATAGTCAAACAGGAAAATAGCATGGAGGATGTTAGATTCACTGATCCTTGCAGCAAGAGAAAATCAGATGTTGATATCAACAGTTCTGACTCAGAATCTTCCAGTTGTTAA	3165	0.3839	MAIRSRSSSFTYDVFLSFRGEDTRHGFTGHLYKALHDRGIYTFIDDEQLQRGEEITPSLVKAIEESRIAITVLSINYASSSFCLNELEYILECFNKKYMXVLPVFFKIDPSDVRHQKGSYGEALAKHEQRFNHSMXKLENWKKALHQVANLSGFHLKHGDGYEHEFIGRIVELVSSKINHAPLPVADYPVGLESQALAVRKLLDVGSDDVHMIGIYGIGGIGKSTLALAVYNLIVHHFDCSCFLQNVREKSSKHGLQHLQSILFREMLGEKEANFASVEQGASVIHHRFQRKKVILILDDVDKYEQLQAIVGRPCLFGPGSRVIITTRDKXLLSSYGVIRTYEVNLLDKNNALDLLSWKAFKTKXIDASYNEVLNDVVIXAYGLPLALEVIGSNLFGKSIEEWKSAIKQYKRIPNNQILEILKVSFDSLEEEEKSVFLDICWLNRYPLSKVEDLLLAHYGDCMKYHIGVLVDKSLIKLSRYTLETRIAMHSLIQDMGKEIVRQESPKDPGKRSRLWLPEDIIQVLEDDKGTSEIXIICLDXPKXDKEAIVEFNTKAFKTMKNLKTLILRNVNFSEGPEHLPNSLRVLEWLGYPSHCLPSDFHPKKLVLCKLSRSSISSLEFSKDFMNLRVLNFDWCKCLTQIPDMSLLQNLEELSFKYCVNLITVHDSVGFLDKLKTLNAFSCEKXSCFPPMKLTSLEKLELSLCYSLKGFPEVLVKMENIRELNLEGCPITELPISFQNLTGLPSLEMFFSTSSIVKVPSSIIMMPKLARIFARGLKGLQWLKQEEGEEQMGPVVVPSKVEWLTASNCNLYDDFFSIDFARFSHVKNLWLPKNNFTILPECLKQCQFLSYLDVSYCKHLREIRGIPPNLKLFSAINCESLASSSKRMLVKQELHEAGNTMFCLPGFSIPKWFNHQNRGTSISFWFRNKFPDKVQCVLVAPMLHNSFHPTVFINGKEYTLYGHFCWTGNHHKYLFDLREASFRIRPYEVPFDSEWNHAKLTFPPGTYTSFDRAKMGIHIVKQENSMEDVRFTDPCSKRKSDVDINSSDSESSSC*	1055

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra1g0816	1054	SUPERFAMILY	"Winged helix" DNA-binding domain	417	526	IPR036390	-
	Vra1g0816	1054	PANTHER	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)	15	916	-	-
	Vra1g0816	1054	SMART	till_3	11	151	IPR000157	GO:0007165
	Vra1g0816	1054	ProSiteProfiles	TIR domain profile.	10	178	IPR000157	GO:0007165
	Vra1g0816	1054	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	176	440	IPR027417	-
	Vra1g0816	1054	Gene3D	-	5	181	IPR035897	-
	Vra1g0816	1054	SUPERFAMILY	Toll/Interleukin receptor TIR domain	6	154	IPR035897	-
	Vra1g0816	1054	Pfam	NB-ARC domain	201	412	IPR002182	GO:0043531
	Vra1g0816	1054	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	15	916	IPR044974	GO:0006952
	Vra1g0816	1054	Gene3D	-	182	340	IPR027417	-
	Vra1g0816	1054	SUPERFAMILY	L domain-like	547	904	-	-
	Vra1g0816	1054	Pfam	TIR domain	12	180	IPR000157	GO:0007165
	Vra1g0816	1054	Gene3D	-	346	430	IPR042197	-
	Vra1g0816	1054	PRINTS	Disease resistance protein signature	212	227	-	-
	Vra1g0816	1054	PRINTS	Disease resistance protein signature	288	302	-	-
	Vra1g0816	1054	PRINTS	Disease resistance protein signature	381	395	-	-
	Vra1g0816	1054	PRINTS	Disease resistance protein signature	692	708	-	-
	Vra1g0816	1054	Gene3D	Ribonuclease Inhibitor	544	692	IPR032675	-
	Vra1g0816	1054	Gene3D	Ribonuclease Inhibitor	693	896	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra1g0816	Vra-Chr1	9582007	9592789	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra1g0816	7	826	WRKY Transcription Factor Family	AT4G12020	30.243	4.16e-75	270

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra1g0816	-		-	gmx:100812810	1478.38