Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0812 ATGTCAGCATCCTTCAGCTATGATGTGTTCCTCAGCTTCAGAGGTTCTGATACTCGCTACGGTTTCACTGGCAATCTCTACAAAGCTCTTTGTGACAAGGGAATCCATGTCTTTATTGATGATGAGGAGCTTCAAAGAGGGGATGAAATCAGAGAAGCACTTATCGAGGCCATTAAACAGTCTAGGATGGCCATAGTTGTGTTCTCCATGAACTATGCATCTTCTTCCTTTTGCTTAGATGAACTTGTCAAGATCATTGACTGTGTTAAGGAAAAGGGTCGTCTGATTTTGCCCATTTTCTACGACGTCCGCCCTTCTCATGTTCGAGGCCTGTCTGGGAGTTATGCAGAAGCTCTGGCCATGCACCAGGAAAGGTTCAAAAGCAGCAACCAAAGCCTCAATGATAACATGGGCAGGTTGCAGAAATGGAAGATGGCTCTTAACCAAGCAGCTAATGTGTCCGGCAAGCATTACAAACTTGGAAATGAATATGAACACGAGTTTATAGGGAAGATAGTTAAAGAGGTCTCCAACAAGATAAACCGCAGACCTTTGCATGTTGCAGATTACCCCGTTGGGATGGAGTGTCGAGTGCAAAAAGTGAAGTCACTTCTTCAATTTGGATCTGATACTGGAGTCCACATTGTAGGGATTTATGGAATAGGCGGAATGGGGAAGACAACGCTAGCTAGAGCAGTTTACAATTCCATTGCAGACCAATTTGAAGGTTTATGTTTTCTTGATGGTGTGAGAGAAAACGCTGTTAAACAAGGGTTAGTACATCTCCAAGAGATGCTTCTTTCTGAAATAGTTGGAGAGAAGGATATTAGGATAGGAAGTGTAAGTAAAGGAATTTCAATAATAAAGCATAGGCTCCACCGAAAGAAGGTTCTTTTGATTCTTGACGATGTTGACAAACTAGAACAAGTTCGAGCAACTGCTGGAGAGCGTAATTGGTTTGGTTCTGGCAGCAGAGTCATCATAACAACTAGGGACAAACATTTGCTTCAGGGAGTTGATGGAAAATATGAGGTAGAGGACTTAAATGAGGAAGAAGCTCTCGAATTGCTTAGTTGGAATGCTTTTAAAGATCACAGAGTTGATCCAAGTTACAAGGACATTTCAAACCAAGCAGTGGCTTATGCTTCTGGCCTTCCACTAGCTTTGGAAGTAATAGGTTCCTTGTTGTTTGGAAAAGGCACAAGAGAATGGGAATCTGCATTAGATCAGTTCAAAAAAATCCCTAACAGAAGGATCCAAGAAATACTTAAGGTGAGCTATAATGCTTTAGAGGAAAATCAACAGAGAATTTTTCTTGACATTGCTTGCTGCTTGAAAGGATATGAATTGGAAGAGGTTGAAGATATACTTGGTGTTCATTATGGTGTTTGCATGAAATATGACATAGGAGTGTTAGTGGATAAATCTCTCATAAAAATTGAGAATGGCTGTGTGACACTTCATGAATTGATAGAAGCTATGGGTAAGGAAATCGATCGCCAAGAATCACCCAAAGAGCTTGGGAAACACAGGAGGTTATGGTTCCATAAAGATATAATTCAAGTTTTAGCAGAAAATACAGGGACTAGTGATATTGAAATAATCTGTTTGGATTTCCCCTTATTTGAAGAAGATGAAGAAGTATTTGTAGAATGGGATGGAGAGGCCTTCAAGAAGATGGAAAACCTCAAAACACTAATTATTAGAAACTCTCATTTTTCAAAAGGTCCAGCATATCTTCCAAATAGTTTAAGAGTATTAGAATGGTGGACATATCCATTACAGGATTTACCAACTGATTTTCATCCGAGCAAACTTGCCATATGCAAATTACCCAGAAGTTGCTTTACATCACTTGAGTTAGCAACCATATCAAAGAAGTTCATGAATCTGACAGTTCTGAATTTTGATGGGACTGAATGTTTGACAAAAATACCTGACATATCCAGCCTCCAAAATTTAGAAAAACTGACATTTGAGTGTTGTGAGAATTTAGTAGCAATTCATGGTTCTGTGGGTTTTCTTGATAAACTTAAAATCTTGAGTGCTTTTGGCTGCAGCAAACTTACGAGTTTTCCACCCATCAAGTTGATCTCTCTTGAACGACTAGATATTTCATCTTGTTCAAGTCTTGAGAGTTTTCCAGAAATATTAGGAAAGATGGAAAATATAACGCAGCTAGAGTTGAAGTACACTCCCTTAAAAGAATTCCCATTTTCATTTAGAAATCTTGCTCGGCTTCAAGATTTGGTGCTGGTTGACTGCGGAAATGTTCAGTTGCCGAGTAGCATTGTCATGTTGCCAGAACTGGCTGAGATTTTCGCCCTGGGGTGTAAAGGGTGGCTATTGCCAAAACAAGATGAGAATGATGAAGAAAAAGTAAGCTTAGTGTCTTCAAATGTAAAATGTCTTTGTCTCTCGGGCTGCAATCTATCAGATGAATACTTTCCCATGGTTTTAGCATGGTTTGTTAATGTGAAAGAGTTAGAACTATCAAGCAATAGCTTCACATTTCTTCCAGAATGCATCAAACAATGTCGCTCTTTAAAATTACTTAACTTGGATAACTGTGAGCATCTTCGAGAAATTAGAGGGACTCCACCAAATTTAGAATATTTCTCTGCTGGAAATTGCAAATCCTTGAGTTTCTGTTGTTCAGCCATGCTATTGGACCAGGAACTGCATGTGGCTGGAAACACTATGTTTTGTTTGCCAGGATCTAGAATACCAGAATGGCTAGAGCAACAAAGTATAGGTCCATCACTATCTTTCTGGTTTCGTGAGAATTTCCCTGTTATGGATCTGTGTTTTGTTATTGGGCCAATGGGTAAGGACTCTATTTTGTTTAGACCAATCATGACCATCAATGGCAACACAATGGAGATACAGTCCTTAACTGATAAGAGGTTTTGTTTTGATTTCCCTGCATTGGATTATCATATACTCATCATTGGTACAAAGTACATGAAGTTTGGAGATAATCTGGATAAACCACTCTCAAAAAATGAATGGAATCATGTGGTGGTTTCCATTGCTCTTGATTTTGAACCAACCCCTAAAGAGATTATTGTCAAGCAAACTGCACTCCATGTAATCAAACCAGAAAGTAGCATGGATGATATCCAATTCACTGATCCTTGTAACCAACCATCCTTCAAAGAGAAGCAAAGATTGGTTGACACTGTTGATTGTCACAGACAGTTTATGCAGCACCAAACCACTTTGGTTTCATTGGAACCACATGTGAGACAAGGCAGAAATTCGCTTTCATTGATTCCACCTCATGCATGCAAAAATAATCTGAACTGGGATTCATTTTCAACTGGAACAAGTAGCATTGCCAGTGTCCAGGAATATGAAATTGCATCAAAGAAGTTACGTTTGGACATGGGAATTTTGCAATTTGTGCAGCAGCGGAAAAGATTGGCTATTTTGGGTTTACAACAACAACGACGCATGGCTTCATTGGATTTACTGCAACGAAGGGGCAGAGAATTGCTTTCATTGCTTTGCTCTCCATCATTGGAGTTGATGGTCTCATGGCAGAGGAGATGCATCACCACTTTCCAAGGTTTGCAGGAGCAACATTTACCTTCGACCATCAAACAAAACTTTGAAGGCTGTAATGGCATCAATGAAGCCAAAGTGAATGAAGTGACAAGATGCAAGAACAATGATGGAAATGACAATGAGAGAAACCCATTAGTGGAACAGCTACTACTGATAAAGTTTCCGAGGCCAAAACGAATACCAGAAGAGCTCATTACAATGGAATTTGAGGAAGCGCATAACAATTTCCTCGCTATAAGGCTGTTATATAGACTTCTCGAAGATAATAGCATCGCCTTGCAAAATTCAAATCCAAAGCATTTGGTTGAGTGGGCACGAGATTTATTGAAAAGTTTACTGGATGTTGCTGTTGAAAGTGTTTTTGAGACTCATTTAAAGGTGCATATATGTATGGTTCACCATTTTCCGGCAGGACCCTTCTTTTTTGGATGGCAGGAATCAAATTCTCTAGTGGCAGCCAACATTTCTCAAAGCTCAGTGAAATATCCAACTTGTAGTAAAATGACTTCAGAGAAGGATGAGCAGCCTCAGTTTAGATTAATTTCAAAGAAAAAATTGCCAGAGCTGTCAAAGTTTAGTATCTCAGATGACGGAGGAACAAAATGTAAAACATTAGGCTGTATAGGTGAGGAAAGCAGTACGATGCAACAGAATGCAGTAAAGGCAACAGGCCTGTCTGATGATATTGACAGTTTGCCCTACACAGAGAGTATCCATAGCAAACAACAGCAAAATGATGTAAACCGTTTATATGGTGATGGTGAAGATGCAAAAGAATCGTTACAGATGTTTGATGCAAAAGATGATGAGCAAAATGAAGAGAATAATGTAATATTGCTGAACAGAATCCATGAAGCGCAAAGAAACTCTGATGCTGCTGGACAGGTTGAACATCTGAATCAGAGGGGAGAGTTCTCTGATGATTTGGTCAATGCAATAAAAAGAATTGAGTCTCGGATTTTGGCTTTCCAAATTTGTTCCAATGTGATGGATTCCACTAAGAACAGTGCAGGTCATCTTACTACACTTGAAGCAGCAAATTCAGACGGTCCTGCAATGCAGAGAAACAGTGGAGTTTCAGGAAGTCAGATAAGCAGTGGAAAGTCCCTCTTGAAAGGACATAGGTTGATGAGTCAAAAAACATTTAAATCGAGTTGTAAGGATGAAAATTCGATTGCTGAAAGTGCATTTGAGGAACCCCTTTTTCCTGGAAAGGAATCATTGAATCAAAGTCAGATGGCAAATCAGAACTTTTGCCTTCAAAATAGTGCAGAGTCTGCAAAGAATATTGATGTACCTAAGAAAAGTGGTACCCAGATGGTATCAAGAGGAGAGTGCTTGAGCAATCATGAAAGAATTCAAAATTCAGAACGAAACATAGCTATAGATAGTGTTAAGCCAATAGATGGGTTAGTTAGCGGAGATGCCTATTTTGAGACTCGAGCTAGTAAGGGTATTCCAGGTTTCAGGGTCCCTTTAAATCAAGACAATAATAGTAAGAAACATTCCATGTTATTAAGTAAAACAAACAGGGAAAATTCAGCAAGAAAAAATCCAGTGGCATGGTCTAAGACTGATCAGAATCCGAGGGAAATGATTTCTGAATCTTCCTATACTCAGAAGTCAGCTAGATCAAAGACCATTATTACAAGGAGAGAAAAACCACCACCTCATCAGATGGTAATGAAACCAACCCTATTGGATCAGAAATCCAGTGACATTAAGGTAAATTCCCATAAACACAGAGGCAGGAGAAGGACTTTTAACACTAGTCATCTTGAACCACGGAATACAAGGGTTCTACAACAACATTTTGAACGGGAGGAGTCAAGCTCAAGCTCTAGCTCTAAGTCTGACTCTGACTCTTCTTGCTGGAGTTCTCAGCAAGGTAGGGCCAATAGTAGTAGTATTGACTCTGAGGACTATTCCTTGTCAGATGGAACACAGTCTCCCTCATCATCAGGAAGGATGGTGGATGCTGCATATGAGGGCAGTTCAGAGGAGACTATCAATTCATATCTCGAGATGGATGATGACCCTTCTCCTAGATTAGGAAGTTTCAAATCTTATAGACATCACGATGAAAGATATCATAAGGAAACAACTGGAAGACTAAGGAGGCTGAGAAATAAGTTGGGACTAATCTTTCACCATCACCATCATCACCATCATCATCATGATCATGGTAACACTCATTCTAGAGAAGGTCATGGACCTACTACGTGGAATCACTTGAAGAATGTTTTCCACCATAAAGACAAGCATGGAGTGTTAACAAAAAATGTTGAGAAGACAAAGGGAGGGCATGCTGCAAAAGTGTTGTCCGGAAACCAGGTTGGGCAGTTTAATAGACTTGCGGAAGGGTTACTGAGGCACATCCGGCATTCAAAGAAACCAAAGCCTCCCAAGTTTGATGTGGTGAAACAGTCAAGGAATAAGCCACATGGACATAATCAGAAAAAGTTGCGTTGGTTGCAAATGCTTCGAAAACAACGGGGAGTGAAGATGAAAAACCAATGCAGAACTAAAATGGGGTTTATGAGCCAAAACTCACTAAAGAATTATTGA 6138 0.3969 MSASFSYDVFLSFRGSDTRYGFTGNLYKALCDKGIHVFIDDEELQRGDEIREALIEAIKQSRMAIVVFSMNYASSSFCLDELVKIIDCVKEKGRLILPIFYDVRPSHVRGLSGSYAEALAMHQERFKSSNQSLNDNMGRLQKWKMALNQAANVSGKHYKLGNEYEHEFIGKIVKEVSNKINRRPLHVADYPVGMECRVQKVKSLLQFGSDTGVHIVGIYGIGGMGKTTLARAVYNSIADQFEGLCFLDGVRENAVKQGLVHLQEMLLSEIVGEKDIRIGSVSKGISIIKHRLHRKKVLLILDDVDKLEQVRATAGERNWFGSGSRVIITTRDKHLLQGVDGKYEVEDLNEEEALELLSWNAFKDHRVDPSYKDISNQAVAYASGLPLALEVIGSLLFGKGTREWESALDQFKKIPNRRIQEILKVSYNALEENQQRIFLDIACCLKGYELEEVEDILGVHYGVCMKYDIGVLVDKSLIKIENGCVTLHELIEAMGKEIDRQESPKELGKHRRLWFHKDIIQVLAENTGTSDIEIICLDFPLFEEDEEVFVEWDGEAFKKMENLKTLIIRNSHFSKGPAYLPNSLRVLEWWTYPLQDLPTDFHPSKLAICKLPRSCFTSLELATISKKFMNLTVLNFDGTECLTKIPDISSLQNLEKLTFECCENLVAIHGSVGFLDKLKILSAFGCSKLTSFPPIKLISLERLDISSCSSLESFPEILGKMENITQLELKYTPLKEFPFSFRNLARLQDLVLVDCGNVQLPSSIVMLPELAEIFALGCKGWLLPKQDENDEEKVSLVSSNVKCLCLSGCNLSDEYFPMVLAWFVNVKELELSSNSFTFLPECIKQCRSLKLLNLDNCEHLREIRGTPPNLEYFSAGNCKSLSFCCSAMLLDQELHVAGNTMFCLPGSRIPEWLEQQSIGPSLSFWFRENFPVMDLCFVIGPMGKDSILFRPIMTINGNTMEIQSLTDKRFCFDFPALDYHILIIGTKYMKFGDNLDKPLSKNEWNHVVVSIALDFEPTPKEIIVKQTALHVIKPESSMDDIQFTDPCNQPSFKEKQRLVDTVDCHRQFMQHQTTLVSLEPHVRQGRNSLSLIPPHACKNNLNWDSFSTGTSSIASVQEYEIASKKLRLDMGILQFVQQRKRLAILGLQQQRRMASLDLLQRRGRELLSLLCSPSLELMVSWQRRCITTFQGLQEQHLPSTIKQNFEGCNGINEAKVNEVTRCKNNDGNDNERNPLVEQLLLIKFPRPKRIPEELITMEFEEAHNNFLAIRLLYRLLEDNSIALQNSNPKHLVEWARDLLKSLLDVAVESVFETHLKVHICMVHHFPAGPFFFGWQESNSLVAANISQSSVKYPTCSKMTSEKDEQPQFRLISKKKLPELSKFSISDDGGTKCKTLGCIGEESSTMQQNAVKATGLSDDIDSLPYTESIHSKQQQNDVNRLYGDGEDAKESLQMFDAKDDEQNEENNVILLNRIHEAQRNSDAAGQVEHLNQRGEFSDDLVNAIKRIESRILAFQICSNVMDSTKNSAGHLTTLEAANSDGPAMQRNSGVSGSQISSGKSLLKGHRLMSQKTFKSSCKDENSIAESAFEEPLFPGKESLNQSQMANQNFCLQNSAESAKNIDVPKKSGTQMVSRGECLSNHERIQNSERNIAIDSVKPIDGLVSGDAYFETRASKGIPGFRVPLNQDNNSKKHSMLLSKTNRENSARKNPVAWSKTDQNPREMISESSYTQKSARSKTIITRREKPPPHQMVMKPTLLDQKSSDIKVNSHKHRGRRRTFNTSHLEPRNTRVLQQHFEREESSSSSSSKSDSDSSCWSSQQGRANSSSIDSEDYSLSDGTQSPSSSGRMVDAAYEGSSEETINSYLEMDDDPSPRLGSFKSYRHHDERYHKETTGRLRRLRNKLGLIFHHHHHHHHHHDHGNTHSREGHGPTTWNHLKNVFHHKDKHGVLTKNVEKTKGGHAAKVLSGNQVGQFNRLAEGLLRHIRHSKKPKPPKFDVVKQSRNKPHGHNQKKLRWLQMLRKQRGVKMKNQCRTKMGFMSQNSLKNY* 2046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0812 2045 MobiDBLite consensus disorder prediction 1698 1855 - -
Vra1g0812 2045 PRINTS Disease resistance protein signature 215 230 - -
Vra1g0812 2045 PRINTS Disease resistance protein signature 291 305 - -
Vra1g0812 2045 PRINTS Disease resistance protein signature 382 396 - -
Vra1g0812 2045 PRINTS Disease resistance protein signature 695 711 - -
Vra1g0812 2045 Pfam NB-ARC domain 197 433 IPR002182 GO:0043531
Vra1g0812 2045 PANTHER ARCHAEAL ATPASE 17 1010 - -
Vra1g0812 2045 SMART till_3 6 153 IPR000157 GO:0007165
Vra1g0812 2045 Gene3D Ribonuclease Inhibitor 794 894 IPR032675 -
Vra1g0812 2045 MobiDBLite consensus disorder prediction 1789 1804 - -
Vra1g0812 2045 SUPERFAMILY "Winged helix" DNA-binding domain 418 523 IPR036390 -
Vra1g0812 2045 ProSiteProfiles TIR domain profile. 5 180 IPR000157 GO:0007165
Vra1g0812 2045 MobiDBLite consensus disorder prediction 1537 1558 - -
Vra1g0812 2045 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 441 IPR027417 -
Vra1g0812 2045 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 1010 IPR044974 GO:0006952
Vra1g0812 2045 SUPERFAMILY L domain-like 549 904 - -
Vra1g0812 2045 Gene3D - 179 345 IPR027417 -
Vra1g0812 2045 SMART AAA_5 212 349 IPR003593 -
Vra1g0812 2045 MobiDBLite consensus disorder prediction 1909 1930 - -
Vra1g0812 2045 CDD AAA 192 330 - -
Vra1g0812 2045 Gene3D - 347 431 IPR042197 -
Vra1g0812 2045 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 155 IPR035897 -
Vra1g0812 2045 Pfam TIR domain 7 182 IPR000157 GO:0007165
Vra1g0812 2045 Gene3D - 5 178 IPR035897 -
Vra1g0812 2045 Coils Coil 2042 2045 - -
Vra1g0812 2045 MobiDBLite consensus disorder prediction 1805 1846 - -
Vra1g0812 2045 MobiDBLite consensus disorder prediction 1698 1735 - -
Vra1g0812 2045 Gene3D Ribonuclease Inhibitor 546 789 IPR032675 -
Vra1g0812 2045 MobiDBLite consensus disorder prediction 1986 2009 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0812 Vra-Chr1 9530466 9542727 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0812 1 778 WRKY Transcription Factor Family AT4G12020 31.807 3.34e-84 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0812 - - vra:106769791 3983.72