Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0809 ATGCCTGGTCTGGTAGAATTGGATGTTTCCAATAATCAATTGCACGGCAAGGTGCCATCTTTTCGTGAGGGTGTAGTTGTTAAAACTGGTGGGAATCCTGATATTGGAAAGGATAAGCCTCAAGCCCCACCTGGCTCAAATCCTCAGGGTAAATCTGGAGGTCAATTTAAGAAAAATAATATTGGAGCAATTATTGGCTCTGTGTTGGGAGGTATCAGTTTAATTGGTTTGGTGGCTGCTCAACATGTGGAATCTGGGAATATGGTTATTTCAATCCAAGTGTTGAGACAAGTTACGAACAATTTCAGTGGGGCAAACATATTGGGGAGAGGTGGTTTTGGCACTGTATACAAAGGGGAATTGTACGATGGAACAAAAATTGCAGTGAAAAGGATGGAATGTGGAATGATGGTTGAGAAGGGGCTCACTGAGTTTGAGTCTGAAATTGCAGTACTAACTAAGGTTCGACATAGACATCTGATTGCATTGGAAGGCCACTGCTTGGATGGAAATGAGAAGCTTCTTGTGTATGAATACATGCCTCAGGGTCCTCTCAGTAAGCATCTATTTGACTGGAAAGAGCAAGGAATACAACCAATGGAATGGAAGAGAAGGCTTTCCATTACCTTGGATGTTGCCAGAGGTGTTGAATATCTTCACGGTTTGGCCCAGCAAATTTTTATCCATAGGGATCTAAAACCATCAAACATCTAA 714 0.4202 MPGLVELDVSNNQLHGKVPSFREGVVVKTGGNPDIGKDKPQAPPGSNPQGKSGGQFKKNNIGAIIGSVLGGISLIGLVAAQHVESGNMVISIQVLRQVTNNFSGANILGRGGFGTVYKGELYDGTKIAVKRMECGMMVEKGLTEFESEIAVLTKVRHRHLIALEGHCLDGNEKLLVYEYMPQGPLSKHLFDWKEQGIQPMEWKRRLSITLDVARGVEYLHGLAQQIFIHRDLKPSNI* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0809 237 Gene3D Phosphorylase Kinase; domain 1 75 179 - -
Vra1g0809 237 Pfam Protein tyrosine and serine/threonine kinase 106 237 IPR001245 GO:0004672|GO:0006468
Vra1g0809 237 SUPERFAMILY Protein kinase-like (PK-like) 83 237 IPR011009 -
Vra1g0809 237 SMART serkin_6 102 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0809 237 ProSiteProfiles Protein kinase domain profile. 102 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0809 237 PANTHER OSJNBA0070M12.3 PROTEIN 80 237 - -
Vra1g0809 237 PANTHER OSJNBA0070M12.3 PROTEIN 1 77 - -
Vra1g0809 237 MobiDBLite consensus disorder prediction 29 54 - -
Vra1g0809 237 Gene3D Transferase(Phosphotransferase) domain 1 180 237 - -
Vra1g0809 237 ProSitePatterns Protein kinases ATP-binding region signature. 108 130 IPR017441 GO:0005524
Vra1g0809 237 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED 80 237 - -
Vra1g0809 237 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED 1 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0809 Vra-Chr1 9514344 9515057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0809 91 237 Receptor kinase-like Gene Family AT5G38990 47.973 2.73e-40 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vra1g0809 PK_Tyr_Ser-Thr 7.9e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0809 - K00924 vra:106757099 468.003