Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0807 ATGAAGCAATTTGATTCGATGAAGTACTTATCCTTGAAGAGAACACTGAACAGTTGTGTAAGCCTCGACCAGCTAAAGAGAATCCATGCACTGTGTGTGACACTGGGATTCTTACACACACAAAATCTCAAACAATCTTTGTCATGCACGTTGCTTCAATGTTATAAGAATGTCGGAAAAACAGAACAAGCGCAGAGGGTCTTCGATCAGATTAATGATCCTGATATAGTATCATGGACATGCCTCCTCAATCTCTACCTTCATTCTGCTTTATCATCTTGTGGGCAGTGCAAGGATTTGGTTAGAGGGAGGGTTGTTCATGGAATGCTGTTGAGGAATGGTTTTGATGAAAACCCTGTTGTGGGGAATTCTCTGATTGACATGTATTGTAGAAATGGGGTGATGGGGATGGCTGCATTGGTTTTTGAGAATATGGGGTCCAAGGATGTGTATTCTTGGACTAGTTTGTTGAATGGGTACATGTTGTGTAACAATGTGAGTTGTGCTCGTGAAGTGTTTGATGCAATGCCTGAAAGAAATTTGGTTTCATGGACGGCTATGATTACTGGGTGTGTCAGAGCAGGAGCTCCAGTTCAGGCTTTGGAGATGTTTAAGCAGATGGAAGGTGATGATGGGGGACTTCATTGTACGGATTTGATGGTGGCGGTGCTCTCCGCGTGTGCGGATGTTGGGGATCTTGATTTTGGTCAGTGTATGCATGGTTGTGTTAAGAAAAGGAGGTTGGAGCTGGATGTTGCGGTGAGCAATGCTCTGATGGATATGTACTCCAAAAGTGGAAGGCTTGACTTGGCTGTAAGGATATTTGATGAAATCTTGAAGAAAGATGTGTTTTCGTGGACTACAATGATATCAGGTTATGCTTATCATGGGGAAGGGCATCTTGCGTTGGAGGCTTTTCGTCGCATGTTAGAATCCGGTGTTAACCCAAACGAGGTAACCCTGTTGTCAGTTTTGACTGCTTGTAGCCATGCTGGGCTAGTCGTGCAGGGAAAAGTGTTGTTCAATAGAATGATTCAGTGCCGTTACATGAAGCCAAAGATTGAACATTATGGATGCCTGGTGGATCTTCTTGGCCGAGCAGGATTGCTGGAAGAGGCAAAAGAAGTTATTGGGATGATGCCATTTAGCCCTGATGCTGCTATGTGGAGATCATTACTGACTGCTTGCTTAGTCCATGAGAATTTGAGAATGGCTCAAATAGCAGGAAAGAAGTTAATTGAACTTGAACCAAATGATGATGGTGTTTATATGCTTCTATGGAATATGTATTGTGTTGCTGATATGTGGAAAGAAGCCTCGGAGATAAGGAAGTTTATGAGGGAAAGGAGGGTCAGAAAAAATCCTGGTCGTAGTATGGTTGATGTGAATGGTGTTGTACAAGAATTCTTTGCCAAAGACTCATCACTCCATGTTAGTGCAGAGCTTTGCCACTTGCTAAAAGGAATGAAGGAGCACTCAGAAACATATAATTTTTAA 1497 0.4275 MKQFDSMKYLSLKRTLNSCVSLDQLKRIHALCVTLGFLHTQNLKQSLSCTLLQCYKNVGKTEQAQRVFDQINDPDIVSWTCLLNLYLHSALSSCGQCKDLVRGRVVHGMLLRNGFDENPVVGNSLIDMYCRNGVMGMAALVFENMGSKDVYSWTSLLNGYMLCNNVSCAREVFDAMPERNLVSWTAMITGCVRAGAPVQALEMFKQMEGDDGGLHCTDLMVAVLSACADVGDLDFGQCMHGCVKKRRLELDVAVSNALMDMYSKSGRLDLAVRIFDEILKKDVFSWTTMISGYAYHGEGHLALEAFRRMLESGVNPNEVTLLSVLTACSHAGLVVQGKVLFNRMIQCRYMKPKIEHYGCLVDLLGRAGLLEEAKEVIGMMPFSPDAAMWRSLLTACLVHENLRMAQIAGKKLIELEPNDDGVYMLLWNMYCVADMWKEASEIRKFMRERRVRKNPGRSMVDVNGVVQEFFAKDSSLHVSAELCHLLKGMKEHSETYNF* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0807 498 TIGRFAM PPR: pentatricopeptide repeat domain 151 182 IPR002885 -
Vra1g0807 498 TIGRFAM PPR: pentatricopeptide repeat domain 182 209 IPR002885 -
Vra1g0807 498 TIGRFAM PPR: pentatricopeptide repeat domain 284 318 IPR002885 -
Vra1g0807 498 TIGRFAM PPR: pentatricopeptide repeat domain 256 283 IPR002885 -
Vra1g0807 498 Pfam PPR repeat 123 149 IPR002885 -
Vra1g0807 498 Pfam PPR repeat 356 380 IPR002885 -
Vra1g0807 498 Pfam PPR repeat 151 180 IPR002885 -
Vra1g0807 498 Pfam PPR repeat 182 209 IPR002885 -
Vra1g0807 498 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 89 494 - -
Vra1g0807 498 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 15 89 - -
Vra1g0807 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Vra1g0807 498 Pfam PPR repeat family 281 329 IPR002885 -
Vra1g0807 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 281 IPR002885 -
Vra1g0807 498 Gene3D Tetratricopeptide repeat domain 344 462 IPR011990 GO:0005515
Vra1g0807 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Vra1g0807 498 SUPERFAMILY TPR-like 261 442 IPR011990 GO:0005515
Vra1g0807 498 Pfam E motif 399 460 IPR046848 -
Vra1g0807 498 Gene3D Tetratricopeptide repeat domain 214 343 IPR011990 GO:0005515
Vra1g0807 498 Gene3D Tetratricopeptide repeat domain 4 213 IPR011990 GO:0005515
Vra1g0807 498 PANTHER OS02G0116100 PROTEIN 15 89 - -
Vra1g0807 498 PANTHER OS02G0116100 PROTEIN 89 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0807 Vra-Chr1 9510180 9512238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0807 4 475 Glycoside Hydrolase AT3G49170 32.347 1.27e-86 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0807 - - gmx:102666130 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0807 1 9510180 9512238 Vra7g1623 7 34713090 34717431 ECH
Vra1g0807 1 9510180 9512238 Vra1g0807 1 9510180 9512238 ECH