Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0785 ATGTCTTCTGCCGGCGGCGACGGTACCTCCGGCGAGCCTCGCCAATACTTCTGTCACCAGTGCAATCGCACCGTTTCTGTTACCCCTTCCCCGTCCTCCGATCTTCTCTGCCCCAATTGCAACGGCGGCTTCCTCGAAGAACTCGAAATCCCTAACCCTAACCCTATCCCTATCCCGTCCAATCCTTTCTTCCCCGACTTCCCTCTCACCGGGACCACCGCCATTCCTCTCATCTTCCCTGGAGGAACTGGCCAGCCCTTCGACGATTTCTCCACCCTCTCCGGCACTCGATCTGACGCCGCCACCGCCGATACTGCCCTCGCCCCCTTTGTGCTCCTCCAGAACTACTTGCAAACCCTAAGAGCCGCTGGCGGCGGTGGAAACCTTCAACTGGTGATTGAGTCCGGCGACCCCGGCGGAGCGTTTCGGTTTCCTGGCATCACCCACGGTGACTACTTCTTCGGGACGGGCCTTGAGGAGCTGATCCAGCACCTTGCCGAGAACGATCCGAACCGCTATGGCACCCCACCGGCTTCTAAGAAGGCGGTGGAGGGGCTGCCGGACGTCTCCGTCACCGACGAGCTGCTTGCGTCGGATTCCTCACAATGTGCAGTGTGCAAAGACACGTTCGAACTCGGTGAAACCGCGAAGCAGATGCCCTGTAAGCATATATATCACGCGGACTGCATTTTACCTTGGTTAGAATTGCATAATTCCTGTCCCGTTTGTCGGTATGAGCTGCCCACAGATGATCCTGATTACGAGCAGAGGGCTCATCGTGGTAGCGGTGGCGGTAGTGGAGGCGGTAGTGGTGGTACCGGCAGTGGGGTGGCTCCCCAGGTGAATTGGAACCTGGCTGTGGGGCCTGGTGGTTCTGCGGATTCGTCTGGTGGAGGAGACAATTCCCAGCGGAGGAGGTTTAGGGTGGCTTTGCCATGGCCCTTCAGGCAATCTGTTTCTTCTGGTGCTGAGACAAGTAATGTTGGCGGTGCCAACAATGATGACAACAGTATAAATGGTGGGGAAACCAATAGTGGGCAATCAAATTCTGAAAACAGGGGAAATCGGAACTTTGAGTCGGAGACCAGACAGGAAGATCTAGATTGA 1107 0.5673 MSSAGGDGTSGEPRQYFCHQCNRTVSVTPSPSSDLLCPNCNGGFLEELEIPNPNPIPIPSNPFFPDFPLTGTTAIPLIFPGGTGQPFDDFSTLSGTRSDAATADTALAPFVLLQNYLQTLRAAGGGGNLQLVIESGDPGGAFRFPGITHGDYFFGTGLEELIQHLAENDPNRYGTPPASKKAVEGLPDVSVTDELLASDSSQCAVCKDTFELGETAKQMPCKHIYHADCILPWLELHNSCPVCRYELPTDDPDYEQRAHRGSGGGSGGGSGGTGSGVAPQVNWNLAVGPGGSADSSGGGDNSQRRRFRVALPWPFRQSVSSGAETSNVGGANNDDNSINGGETNSGQSNSENRGNRNFESETRQEDLD* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0785 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 322 - -
Vra1g0785 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 250 IPR013083 -
Vra1g0785 368 SMART ring_2 203 243 IPR001841 -
Vra1g0785 368 SUPERFAMILY RING/U-box 186 251 - -
Vra1g0785 368 MobiDBLite consensus disorder prediction 318 368 - -
Vra1g0785 368 Pfam Ring finger domain 202 244 IPR001841 -
Vra1g0785 368 ProSiteProfiles Zinc finger RING-type profile. 203 244 IPR001841 -
Vra1g0785 368 CDD RING-H2_RNF126_like 202 244 - -
Vra1g0785 368 Pfam zinc-ribbon 15 48 IPR039525 GO:0061630
Vra1g0785 368 MobiDBLite consensus disorder prediction 318 355 - -
Vra1g0785 368 MobiDBLite consensus disorder prediction 254 303 - -
Vra1g0785 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 9 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0785 Vra-Chr1 9305300 9313797 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0785 161 257 C3H Transcription Factor Family AT5G15820 53.608 1.53e-32 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0785 K11982 - gmx:100818686 541.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0785 1 9305300 9313797 Vra1g0785 1 9305300 9313797 ECH