Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0784 ATGGCAACTCCAAGTTCCCGTAGATTCAAGTACGATGTGTTCCTCAGCTTTAGAGGAGAAGACACGCGTTATGGTTTCACTGGTGATCTCTACGAAGCTCTCCGTCACAAGGGAGTTCACACTTTCATGGATGATGAGGAACTTCAAAGCGGAGAGGAAATCACACCAGCACTTCAGAAAGCAATTGAAGAGTCTAAGATTGCCATCGTTGTCCTCTCTCACAACTATGCCTCTTCCTCCTTCTGCTTGGATGAACTTGCAACCATCCTTGACTGCAATAGTAAAGGGCTGTTGGTTATACCAGTGTTTTATAAGGTGGATCCTTCTTATGTCAGACATCAGAAAGGTAGCTATGAAGAAGCATTGGCTAAGCATCAAAAGAGGTTCAAAGGGCAGGAGGAGAAGTTACATAAATGGAAAATGGCTCTGCGTCAAGTTGCTGACTTGTGTGGCTATCACTTCGGAGATGGGTATGAATACCAGTACAAGTTTATTGGGAGCATTGTTGAACGGGTTTCCAGGGTGATTAATCGTGTTCCTTTACATGTTGCGGTTTATCCAGTTGGCCTACCGTCACAGGTGCTGAAAGTCAAGAAACTTTTGGATCTTGGATCGCATGATGTTGTCCACATGATAGGGATCCGTGGAATGNGTGGGTTAGGAAAAACAACACTTTCTCTGGCAGTTTATAATTCCATTGCTGATGATTTTGATGAGTCATGTTTTCTTCAAAATGTAAGAGAAGAATCAAACGAAGAGGGGCTAAAACACCTCCAAAGCATCCTTCTTTCAAAAATGCTTGGAGAGAAGAATATCATCTTAACAAGTTGGCAAGAAGGAGCATCAATGATACAGGAGAGGCTGAGGCGAAAGAAGGTTCTCTTGATTCTAGATGATGTTGACAACAGAAAGCAGTTACAAGCATTTGCTGGAAGAGCTGATTGGTTTGGTCCCGGCAGCAGGGTTATCATCACCACTCGGGACGAACAGGTGCTAAAATCTCATGAGATTGAAAGAACTTATGAGATGGAGGAATTGAATGAGAATGATTCTCTTCAATTGCTTATATGGAATGCTTTCAAAAGGGAAAAAGTTGATCCGAGTTACGAGGACGTGTTGAAACGTGTAGTAACTTATGCTTCTGGGCTTCCATTGGCTTTAGAAGTAATAGGTTCCAACTTGGTTGGAAAAAGTGTTGAAGAATGGGAGTCTGCGATTGAACATTACAAAAGAATTCCTAACGGTCAAATTCTAGAGATACTTAAAGTAAGTTTTGATGGTTTGGGGGAAGAAGAAAAAAATGTCTTTCTTGACATGGCCTGTTTCTTTAAAGGAAGTAGTTTGGAAGAAGTTGAACATATACTTGGTATTCTTTATGATAACAACATGAAACATCATATCGGGGTGTTGGTTGAAAAATCTCTCATAAAGGTTCGGTATGGAAGGTTTCGTGTAATTGAAATGCACGACTTGATTGAGGACATGGGTAGAGATATTGACCGGCAAGAGTCACCCAAAGAGCGAGAGAACCACAGGAGATTATGGTTAGGGAAAGATATTCTTCATGTTTTAAAACACAACAAGGGAACTAGCAAAACTGAAATCATACGCCTGGATTTGTCTATATCTGAGAGAGAAGAAACGCTAGAATGGAATCCCAACGCCTTCAGAAGGATGAAAAACCTTAAAATACTTATCATTAGAAATGGTNAATTTTCCAAAGGTNCCAATTATCTTCCAAAAAGTTTGAGAGTACTGGAATGGCATGGATACCCTTCAAATTGTTTTCCATCAAATTTTGATCCGAACAATCTTGTGACATGCAAGTTACCTAACAGTCATTTTACGTCATTTGGATTCCTTGGCTCAGCAAAGAAGTTTGAAAATCTAACTGTCTTGAAATTTGACGGGTGCAAACTTTTAACACAGACACCCGATATGTCTGTTCTCAGAAATTTGGAGGAAGTTTCATTTAACCGGTGTGAGAGTTTAGTTGCAGTTCATGACTCAATTGGTTTTATGAGTAAACTTAAAATACTGCATGCGAAACATTGCATCAAGCTTACGAGTTTTCCACCTCTCAACTTGCCCACTCTTGAAAAGCTAAAACTTTCATATTGTTCCAATCTTGAGAAATTTCCAGAAATACTAGGAAAGATGGGAAACATAAAGGAACTTGAATTGCGTGAGCTTCCCATTAAAGAATTGCCACTATCGTTTCAAAATCTTATTGGACTCGAACGGTTATCCTTGTCATGTGAAAATGTTCACTTACGAAGTAGCATTTTGACGATGCCTAACTTGATTGAGTTTAGTGTTACTAATTGCAAGGAGTGGCAATGGATAAAATCAGATGCTGAAGATAACGTAGGCTCAATGGTTCCTTCAAAGTTAAAGCGGTTTTCAGCACAGTCTTGCAACCTGGATGATAACTTCTTTTCAGCAGGTTTCATGCAGTTGGCACAAGTGCGTTCTTTAATTCTACTGAACAATAATTTCAAACACCTTCCTGAATGCATCAAAGAATTTCACAACCTCAACGAGCTTAATGTGACTCATTGCAAACATCTTGAGGAAATCAGAGGGTTTCCACCAAAATTAGTATATTTCAGTGCACCAAACTGTATATCTTTGACTTCCACCAGCTTAGACATGTTGCTAAATAAGGAACTATACGAAGCTAGAAAAGCTACTAACTTCACGTTCCCAGGAGAAAGTTTTCCAGAGTGGTTTGATCTGAAGAGCAGTGGACCTCCATGTTCTTTCTGGTTTCGTAATAAGTTTCCTGCCAGAGTTCTTTCTCTTCTTATTTTACATATGAATAAATATGATTACTTTATCTTTTACCCTAAGGTGTACATTAATGGGAAATGGCAAACAGGCAGTAGCCGCTATTTTTTGGAGCATACGAAATTTGAATTCGGTCTAACATACCTCTGTGATCTAAATTTAATGTATGGTAATTTGTTTGAACAACCTTTAGAAAAGGAATGGAATCACGTGGAGGTTACATATAGTACTCCGATAGGGAAGTCATGGGTTAAAGCAATAGGAATCCATATATTCAAAGAGGAAAACAACATCATGGAAGACATTCGGTTTGATGATCCTTATATCATGGAAGACATCATGGAAGAAGAAGAAAAGGAGGAAGAAAAGGAAGAAGGAGAAGAAAAAGAAGAAAAAGAAGAAAAGGCAAAAGAAGAAGAAAAAAAAGAAAAGGCAGAAGAAGAAGAAAATAGCATCATGGAAGACACCATGGAAGAAGAAGGAAGAAGGGGAAAAAGAAGAAAACTGCATCATGGAAGACATTCCCGGTTTGATGATCCATTTACCAACAAGAAAAGGAAGAAGGGAAAGGAGAAGAGGAACAAGAAGAAAAAGAAAAATAACATGTAG 3399 0.3889 MATPSSRRFKYDVFLSFRGEDTRYGFTGDLYEALRHKGVHTFMDDEELQSGEEITPALQKAIEESKIAIVVLSHNYASSSFCLDELATILDCNSKGLLVIPVFYKVDPSYVRHQKGSYEEALAKHQKRFKGQEEKLHKWKMALRQVADLCGYHFGDGYEYQYKFIGSIVERVSRVINRVPLHVAVYPVGLPSQVLKVKKLLDLGSHDVVHMIGIRGMXGLGKTTLSLAVYNSIADDFDESCFLQNVREESNEEGLKHLQSILLSKMLGEKNIILTSWQEGASMIQERLRRKKVLLILDDVDNRKQLQAFAGRADWFGPGSRVIITTRDEQVLKSHEIERTYEMEELNENDSLQLLIWNAFKREKVDPSYEDVLKRVVTYASGLPLALEVIGSNLVGKSVEEWESAIEHYKRIPNGQILEILKVSFDGLGEEEKNVFLDMACFFKGSSLEEVEHILGILYDNNMKHHIGVLVEKSLIKVRYGRFRVIEMHDLIEDMGRDIDRQESPKERENHRRLWLGKDILHVLKHNKGTSKTEIIRLDLSISEREETLEWNPNAFRRMKNLKILIIRNGXFSKGXNYLPKSLRVLEWHGYPSNCFPSNFDPNNLVTCKLPNSHFTSFGFLGSAKKFENLTVLKFDGCKLLTQTPDMSVLRNLEEVSFNRCESLVAVHDSIGFMSKLKILHAKHCIKLTSFPPLNLPTLEKLKLSYCSNLEKFPEILGKMGNIKELELRELPIKELPLSFQNLIGLERLSLSCENVHLRSSILTMPNLIEFSVTNCKEWQWIKSDAEDNVGSMVPSKLKRFSAQSCNLDDNFFSAGFMQLAQVRSLILLNNNFKHLPECIKEFHNLNELNVTHCKHLEEIRGFPPKLVYFSAPNCISLTSTSLDMLLNKELYEARKATNFTFPGESFPEWFDLKSSGPPCSFWFRNKFPARVLSLLILHMNKYDYFIFYPKVYINGKWQTGSSRYFLEHTKFEFGLTYLCDLNLMYGNLFEQPLEKEWNHVEVTYSTPIGKSWVKAIGIHIFKEENNIMEDIRFDDPYIMEDIMEEEEKEEEKEEGEEKEEKEEKAKEEEKKEKAEEEENSIMEDTMEEEGRRGKRRKLHHGRHSRFDDPFTNKKRKKGKEKRNKKKKKNNM* 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0784 1132 SUPERFAMILY "Winged helix" DNA-binding domain 416 525 IPR036390 -
Vra1g0784 1132 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 152 IPR035897 -
Vra1g0784 1132 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 14 912 - -
Vra1g0784 1132 MobiDBLite consensus disorder prediction 1043 1058 - -
Vra1g0784 1132 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 912 IPR044974 GO:0006952
Vra1g0784 1132 ProSiteProfiles TIR domain profile. 9 176 IPR000157 GO:0007165
Vra1g0784 1132 Gene3D - 345 429 IPR042197 -
Vra1g0784 1132 SUPERFAMILY L domain-like 547 895 - -
Vra1g0784 1132 Coils Coil 1040 1086 - -
Vra1g0784 1132 SMART till_3 10 149 IPR000157 GO:0007165
Vra1g0784 1132 PRINTS Disease resistance protein signature 211 226 - -
Vra1g0784 1132 PRINTS Disease resistance protein signature 287 301 - -
Vra1g0784 1132 PRINTS Disease resistance protein signature 380 394 - -
Vra1g0784 1132 PRINTS Disease resistance protein signature 694 710 - -
Vra1g0784 1132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 438 IPR027417 -
Vra1g0784 1132 MobiDBLite consensus disorder prediction 1116 1132 - -
Vra1g0784 1132 Pfam NB-ARC domain 196 411 IPR002182 GO:0043531
Vra1g0784 1132 Gene3D - 5 179 IPR035897 -
Vra1g0784 1132 Pfam TIR domain 10 173 IPR000157 GO:0007165
Vra1g0784 1132 Gene3D Ribonuclease Inhibitor 719 892 IPR032675 -
Vra1g0784 1132 MobiDBLite consensus disorder prediction 1059 1079 - -
Vra1g0784 1132 Gene3D - 180 341 IPR027417 -
Vra1g0784 1132 MobiDBLite consensus disorder prediction 1043 1132 - -
Vra1g0784 1132 Gene3D Ribonuclease Inhibitor 497 718 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0784 Vra-Chr1 9249911 9275489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0784 11 776 WRKY Transcription Factor Family AT4G12020 29.606 2.94e-78 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0784 - - vra:106763192 1716.44