Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0781 ATGGCAACTCCAAGTTCCCGTAGATTCACATACGATGTGTTCCTCAGCTTTAGAGGGGAAGACACTCGTTATGATTTCACTGGTTATCTCTACAAAGCTCTATGTGATGGGGGAGTTCACACTTTCATGGATGATGGCAAACTTCAAAGCGGAGAGGAAATCACACCAGCACTTCAGAAAGCAATTCAAGAGTCTAAGATTGCCATCGTTATCCTCTCTCACAACTATGCCTCTTCCTCCTTCTGCTTGGATGAACTTGCAACCATCCTTGACTGCAAGAGTAAAGGGCTGTTGGTTATACCAGTGTTTTATAAGGTGGATCCTTCTTATGTCAGACATCAGAAAGGTAGCTATGAAGAAGCATTGACTAAGCATCAAAAGAGGTTCAAAGGGCAGGAGGAGAAGTTACATAAATGGAAAACGGCTCTGCGTCAAGTTGCTGACTTGTCTGGCTATCACTTCGGAGATGGGTATGAATACCAGTACAAGTTTATTGGGAGCATTGTTGAACGGGTTTCCAGGGTGATTAATCGTGTTCCTTTACATGTTGCGGTTTATCCAGTTGGCCTACCGTCACAGGTGCTGAAAGTCAAGAAACTTTTGGATCTTGGATCGCATGATGTTGTCCACATGATAGGGATCCGTGGAATGGGTGGGTTAGGAAAAACAACACTTTCTCTAGCAGTTTATAATTCCATTGCTGATGATTTTGATGAGTCATGTTTTCTTCAAAATGTAAGAGAAGAATCAAACAAAGAGGGGCTAAAACACCTCCAAAGCATCCTTCTTTCAAAAATGCTTAGAGAGAAGAATATCATCTTAACAAGTTGGCAAGAAGGAGCATCANTGATACAGGAGAGGCTGGGGCGAAAGAAGGTTCTCTTGATTCTAGATGATGTTGACAACAGAAAGCAGTTACAAGCATTTGCTGGAAGAGCTGATTGGTTTGGTCCCGGCAGCAGGATTATCATTACCACTCGGGACGAACAACTGCTAAAATCTCATGAGATTGAAAGAACTTATGAGATGGAGGAATTGAATGAGAATGATTCTCTTCAATTGCTTATATGGAATGCTTTCAAAAGGGAAAAAGTTGATCCGAGTTACGAGGACGTGTTGAAACGTGTAGTAACTTATGCTTCTGGGCTTCCATTGGCTTTAGAAGTAATAGGTTCCAACTTGGTTGGAAAAAGTGTTGAAGAATGGGAGTCTGCGATTGAACATTACAAAAGAATTCCTAACGGTCAAATTCTAGAGATACTTAAAGTAAGTTTTGATGNTTTGGGGGAAGAAGAAAAAAATGTCTTTCTTGACATNGCCTGTTTCTTTAAAGGAAGTAGTTTGGAAGAAGTTGAACATATACTTGGTATTCTTTATGATAACAACATGAAACATCATATCGGGGTGTTGGTTGAAAAATCTCTCATAAAGGTTCGGNATGGAAGGTTTNGTGTAATTGAAATGCACGACTTGATTGAGGACATGGGTAGAGATATTGACCGGCAAGAGTCACCCAAAGAGCNAGAGAACCACAGGAGATTATGGTTAGGGAAAGATATTCTTCATGTTTTAAAACACAACAAGGGAACTAGCAAAACTGAAATCATACGCCTGGATTTGTCTATATCTGAGAGAGAAGAAACGCTAGAATGGAATCCCAACGCCTTCAGAAGGATGAAAAACCTTAAAATACTTATCATTAGAAATGGTNAATTTTCCAAAGGTNCCAATTATCTTCCAAAAAGTTTGAGAGTACTGGAATGGCATGGATACCCTTCAAATTGTTTTCCATCAAATTTTGATCCGAACAATCTTGTGACATGCAAGTTACCTAACAGTCATTTTACGTCATTTGGATTCCTTGGCTCAGCAAAGAAGTTCGAAAATCTAACTGTCTTGAATTTTGACTGGTGCATGTTTTTAACACAGACACCCGATATGTCTGATCTCGGAAATTTGGAGGAAGTTTCATTTAACTGGTGTGTGAGTTTAGATGCAGTTCATGACTCAATTGGTTTTATGAGTAAACTTAAAATACTGCATGCGAATCATTGCATCAACCTTACGAGTTTTCCACCTCTTAACTTGCCTACTCTTGAAAGCCTAGAACTTTCATTTTGTTACAGTCTTGAGAAATTTCCAGAAATACTAGGAAAGATGGGAAACATAAGGGTACTTCAATTGCTAGATCTTCCCATTAAAGAATTGCCACTGTCGTTTCAAAATCTTATTGGACTCGAACAGTTATCCTTGTCATGTGAAATTGTTCACTTAAGAAGTAGCATTTTCACGATGCCTAACTTGATTAAGTTTAGTGTTACTAATTGCAAGGAGTGGCAATGGATAAAATCAGAAGATGCTGAAGATAACGTAGGCTCAGTGGTTCCTTCAAAGTTAGATTGGTTTTCGGCCTGGTCTTGCAACCTGGATGATGACTTCTTTTCAGCAGGTTTCATGCGGTTGGCACGAGTGCGTGATTTATATCTACAGGACAATAATTTCAAACACCTTCCTGAATGCATCAAAGAATTTCACAACCTCAACTCGCTTGATGTGACTCATTGCAAACATCTTGAGGAAATCAGAGGGTTTCCACCAAAATTAAAATATTTCAGTGCACCACAATGTATATCTTTGACTTCCACCAGCTTAGACATGTTGCTAAATAAGGAACTATACGAAGCTAGAAAAACTGCTATCTTCACGTTTCCAGGAGAAAGTTTTCCAGAGTGGTTTGATCTGAAGAGCAGTGGACCTTCATGTTCTTTCTGGTTTCGTAATAAGTTTCCTGCCAGAGTTCTTTCTCTTCTTATTATACATATGAATAAATATGAAAACTTAAGTACCATTTTTGAGGTGCACATTAATGGGGAATTGCAAACAGGCGGAGGCCACTATTTGTTGGAGGTGGCGAAATTTGAATTCGGTCAAACATACCTCTCTGATCTAAAAATGTATGTTAATTTTTTTGAACAACCTTTTGGAAAGGAATGGAATCACGTGGAGGTTACATATTATACTCCGTCAAGGAAGTCATGGATTAAAGCAACAGGAATCCATGTATTCAAAGAGGAAATGGAAGACATTCGGTTTGATGATCCTTATATCGTGGAAGACATCATGGAAGAAGAAGAAAAGGAGGAAGAAAAGGAAGAAGGAGAAGAAAAAGAAGAAAAGGCAAAAGAAGAAGAAAAAAAAGAAAAGGCAGAAGAAGAAGAAAATAGCATCATGGGACACCATGGAAGAAGAAGGAAGAAGGGGAAAAAGAAGAAAACTGCATCATGGAAGACATTCCTAGTTTGA 3303 0.3887 MATPSSRRFTYDVFLSFRGEDTRYDFTGYLYKALCDGGVHTFMDDGKLQSGEEITPALQKAIQESKIAIVILSHNYASSSFCLDELATILDCKSKGLLVIPVFYKVDPSYVRHQKGSYEEALTKHQKRFKGQEEKLHKWKTALRQVADLSGYHFGDGYEYQYKFIGSIVERVSRVINRVPLHVAVYPVGLPSQVLKVKKLLDLGSHDVVHMIGIRGMGGLGKTTLSLAVYNSIADDFDESCFLQNVREESNKEGLKHLQSILLSKMLREKNIILTSWQEGASXIQERLGRKKVLLILDDVDNRKQLQAFAGRADWFGPGSRIIITTRDEQLLKSHEIERTYEMEELNENDSLQLLIWNAFKREKVDPSYEDVLKRVVTYASGLPLALEVIGSNLVGKSVEEWESAIEHYKRIPNGQILEILKVSFDXLGEEEKNVFLDXACFFKGSSLEEVEHILGILYDNNMKHHIGVLVEKSLIKVRXGRFXVIEMHDLIEDMGRDIDRQESPKEXENHRRLWLGKDILHVLKHNKGTSKTEIIRLDLSISEREETLEWNPNAFRRMKNLKILIIRNGXFSKGXNYLPKSLRVLEWHGYPSNCFPSNFDPNNLVTCKLPNSHFTSFGFLGSAKKFENLTVLNFDWCMFLTQTPDMSDLGNLEEVSFNWCVSLDAVHDSIGFMSKLKILHANHCINLTSFPPLNLPTLESLELSFCYSLEKFPEILGKMGNIRVLQLLDLPIKELPLSFQNLIGLEQLSLSCEIVHLRSSIFTMPNLIKFSVTNCKEWQWIKSEDAEDNVGSVVPSKLDWFSAWSCNLDDDFFSAGFMRLARVRDLYLQDNNFKHLPECIKEFHNLNSLDVTHCKHLEEIRGFPPKLKYFSAPQCISLTSTSLDMLLNKELYEARKTAIFTFPGESFPEWFDLKSSGPSCSFWFRNKFPARVLSLLIIHMNKYENLSTIFEVHINGELQTGGGHYLLEVAKFEFGQTYLSDLKMYVNFFEQPFGKEWNHVEVTYYTPSRKSWIKATGIHVFKEEMEDIRFDDPYIVEDIMEEEEKEEEKEEGEEKEEKAKEEEKKEKAEEEENSIMGHHGRRRKKGKKKKTASWKTFLV* 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0781 1100 Gene3D - 5 179 IPR035897 -
Vra1g0781 1100 Gene3D Ribonuclease Inhibitor 712 894 IPR032675 -
Vra1g0781 1100 SUPERFAMILY L domain-like 547 912 - -
Vra1g0781 1100 Gene3D Ribonuclease Inhibitor 504 711 IPR032675 -
Vra1g0781 1100 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 913 IPR044974 GO:0006952
Vra1g0781 1100 SMART till_3 10 149 IPR000157 GO:0007165
Vra1g0781 1100 MobiDBLite consensus disorder prediction 1053 1079 - -
Vra1g0781 1100 PRINTS Disease resistance protein signature 211 226 - -
Vra1g0781 1100 PRINTS Disease resistance protein signature 287 301 - -
Vra1g0781 1100 PRINTS Disease resistance protein signature 380 394 - -
Vra1g0781 1100 PRINTS Disease resistance protein signature 694 710 - -
Vra1g0781 1100 SUPERFAMILY "Winged helix" DNA-binding domain 416 525 IPR036390 -
Vra1g0781 1100 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 14 913 - -
Vra1g0781 1100 ProSiteProfiles TIR domain profile. 9 176 IPR000157 GO:0007165
Vra1g0781 1100 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 438 IPR027417 -
Vra1g0781 1100 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 152 IPR035897 -
Vra1g0781 1100 Gene3D - 345 429 IPR042197 -
Vra1g0781 1100 Pfam TIR domain 11 173 IPR000157 GO:0007165
Vra1g0781 1100 MobiDBLite consensus disorder prediction 1040 1100 - -
Vra1g0781 1100 Gene3D - 180 341 IPR027417 -
Vra1g0781 1100 Coils Coil 1037 1075 - -
Vra1g0781 1100 Pfam NB-ARC domain 196 411 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0781 Vra-Chr1 9198584 9203276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0781 11 776 WRKY Transcription Factor Family AT4G12020 29.098 3.40e-76 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0781 - - vra:106763192 1674.45