Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0780 ATGGCAACTCTAAGTTCTCGTAGATTCACGTACCATGTGTTCCTAAGCTTTAGAGGAGAAGACACTCGTTATGGTTTCACTGGTTATCTCTACAAAGCTCTCTGGGACAGGGGAATTCATACTTTCATGGATGATGACAAACTTCAAAGCGGAGAGGAAATCACACCAGCACTTCAGAAAGCAATTCAAGAGTCTAGGATTGCCATTGTTGTTCTCTCTCACAACTATGCTTCTTCCTCCTTCTGCTTGGATGAACTTGCAACCATCCTTGACTGCCAGAGTGAAGGGCTGTTGGTTATACCAGTGTTTTATAAGGTGGATCCTTCTAATGTCAGACATCAGAACGATAGCTATAAAGAAGCATTGGCTAAGCATCAAGAGAGGTTCAAAGGGCAGGAGGAGAAGTTAAATAAATGGAAAATGGCTCTGCGTCAAGTTGTTGACTTGTGTGGCTATCACTTCGAAGATGGGAATGATTACAAGTATAAGTTTATTGGGAGCATTGTTGAACGGGTTTCCAGGGTGATTAATCGTGTTCCTTTAAAGGTTNCGGATTACTTAGTTGGCCTACCGTCACAGGAGCTGAAAGTCAAGAAACTTTTGGATCTTGGATCGAATGCTGTTGTCCACATGATAGGGATCCATGGAATGGGTGGGTTAGGAAAAACAACACTTTCTCTAGTAGTTTATAATTCGATTGCTGATAATTTTGATTGTTCATGTTTTCTTCATATTGTAAGAAAAAAATCAAACAAAGATAGGCTAGAAGACCTCCAAAGCATCCTTCTTTCAAAAATGGTTANAGAGGAGAATATCATGTTAACAAGTTGGCAAGAAGGAGCATCAATGATACAGCAGAGGCTGGGGCGAAAGAAGGTTCTCTTGATTCTAGATAATGTTGACAACAGANAGCAGTTAGAAGCATTTGCTGGAAGAGCTGATTGGTTTGGTCCCGGCAGCAGGGTTATCATTACCACTCGGGACGAACAGCTGCTAAAATCTCATCAGATCGAAAGAACTTATAAGATGGAGGAATTGAATGACAATGATTCTCTTCAATTGCTTAAATGGAATGCTTTCAAAAGGGAAAAAGTTGATCCAAGTTACGAGGACGTGTTGAAACGTGTAGTAACTTATGCTTCTGGTCTTCCATTGGCTTTAAAAGTAATAGGTTCCAACTTGTACAACAAAAGTGTAGAAGAATGGGAGTCTGCAATTGAACATTACGAAAGAATTCCTAACGATGAAATTCTTCAGATACTTAAAGTAAGCTATGTTGCTTTGGGGGAAGAAGAAAAAAGCGTCTTTCTTGACATCGCCTGTTTCTTTAATGAAAGTAGTTTGGAAGAAGTTGAAGGTATACTTCGTGTTCTTTATGGTAACAACATGAAACATCATATTGGCGTGTTGCTGGATAAATCTCTCATAGATTTTTGGTCGGATGATGAAGATTGTATTGTTATGCACGACTTGATTGAGGACATGGGTACACATATTGACCAGCAAGAGTCACCCAAAGAGCCAGGGAAGCGGAGGAGATTATGGTCAGAGGAAGATATCCTTCATGTTTTAAAAAACGACAAGGGTACTAGCAAAACTGAAATCATAATCCTGGATTCCGAGCAAGAAAAAACGCTAGAATGGAATCCCAACGCCTTCAGAAGAATGAAAAACCTAAAAATACTTATCATTAGAAATGGTAAATTTTCCAAAGGTCCCAATTATTTTCCGGAAAGTTTGAGATTACTGGAATGGCATGGATACCCTTCAAATTCTTTACCATCAAATTTTGATCCGAGCAATCTTGTGACATGCATGTTACCGAACAGTCATTTTACGTCATTTGAATTCCTTGGCTCATCAAAGAAATTCGAGAATCTATCTGTCTTGAATTTTGACTGGTGCAAATTTTTGACACATATACCCGATATGTCTGATTTCGTAAATTTGGAGGAAGTTTCATTTAAAGGATGTGAGAGTTTAGTTGCAGTTCACGACTCAATTGGTTTTATGAGTAAACTTAAAATATTGAATGCGGAATGTTGCATCAAGCTTATGAGTTTTCCACCTCTGAACTTGCCCACTCTTGAAAGACTACAACTTTCAGATTGTTCCAGTCTTGAGAAATTTCCAGAAATACTAGGAAAGATGGAAAACATAAAGGGATTTGAATTGGCGGGTCTTCCCATTAAAGAATTGCCACTGTCGTTTCAAAATCTTATTGGACTCGAAGAGTTATCCTTGTCATGTAAAATTGTTCACTTAAGAAGTAGCATTTTCACTATGCCTAACTTGATTTATTTTATTGTTACTGATTGCATGGAGTGGAAATGGGTAAAATCAGACGATGCTGAAGATAACCTAGGCTCAACGGTTCCTTCAAAGTTAGAAGTTTTTTCGGCACCGTCTTGCAACCTGGATGATAACTTCTTTTCAGCAGGTTTCATGCAGTTGGCACAAGTGCGTTCTTTAATTCTACAGAACAATAATTTCAAAAACCTTCCTGAATGCATCAAAGAATTTCACAATCTCAAGCACCTTGATGTGACTCATTGCAAACATCTTGAGGAAATCAGAGGGTTTCCACCAAAATTAGAATATTTCAGTGCACCAAACTGTATATCTTTGAGTTCCACCAGCTTAGACATGTTGCTAAATAAGGAACTATACGAAGTTAGAAAAGCTACTAACTTCAAGTTTCCAGGAGAAAGTTTTCCAGAGTGGTTTGATCTGAAGAGCAGTGGACCTTCATGTTCTTTCTGGTTTCGTAATAAGTTTCCAGCCAGAGTTCTTTCTCTTCTTATTATACATATGAATAAATATGAAAACTTAAGTATCTTTGACCCTGAGGTGTGCATTAATGGGAAATGGCAAACAGGCGGAGGCCACTATTTGTTAGAGGAGACGAAATTTGAATTCGATCAAACATACCTCTGTGATCTAAAAATGTATGGTAATTTTTTTAAACAACCTTTTGAAAAGGAATGGAATCACGTGAAAGTTACATATAGTACTCCGACAGGGAAGTCATGGATTAAAGCAACAGGAATCCATGTATTCAAAGAGGAAAACAACATCATGGAAGACATTCGGTTTGATGATCCTTATATCATGGAAGAAGAAGAAAAGGAGGAAGAAAAGGAAGAAGGAGAAGAAGAAGAGGAAGAAAAAGAAGAAAAGGCAGAAGAAGAAAATAGCATCATGGAAGACACCATGGAAGAAGAAGGAAGAAGAGGAAAAAGAAGAAAACTGCATCATGGAAGACATTCCTGGTTTGATGATCCATATACCAACAAGAAAAGGAAGAAGGGGAAGGAGAAGAGGAACAAGAAGAAAAAGAAAAATAACATGCAGAAGAAGAAGAAAATAGCTTCATGGAAGACATTGCATTTGATGTTATATCACGGAAGACATCATGGAAGAAGAGAGAAAAAAAAAGAAGAAAACAACATCATGAAAGACACCATGGAAGAAGAAGGAAGAAGAGGAAAAAGAAGAAAACAGCAGCATGGAAGCCATTCGGTTTGA 3528 0.3804 MATLSSRRFTYHVFLSFRGEDTRYGFTGYLYKALWDRGIHTFMDDDKLQSGEEITPALQKAIQESRIAIVVLSHNYASSSFCLDELATILDCQSEGLLVIPVFYKVDPSNVRHQNDSYKEALAKHQERFKGQEEKLNKWKMALRQVVDLCGYHFEDGNDYKYKFIGSIVERVSRVINRVPLKVXDYLVGLPSQELKVKKLLDLGSNAVVHMIGIHGMGGLGKTTLSLVVYNSIADNFDCSCFLHIVRKKSNKDRLEDLQSILLSKMVXEENIMLTSWQEGASMIQQRLGRKKVLLILDNVDNRXQLEAFAGRADWFGPGSRVIITTRDEQLLKSHQIERTYKMEELNDNDSLQLLKWNAFKREKVDPSYEDVLKRVVTYASGLPLALKVIGSNLYNKSVEEWESAIEHYERIPNDEILQILKVSYVALGEEEKSVFLDIACFFNESSLEEVEGILRVLYGNNMKHHIGVLLDKSLIDFWSDDEDCIVMHDLIEDMGTHIDQQESPKEPGKRRRLWSEEDILHVLKNDKGTSKTEIIILDSEQEKTLEWNPNAFRRMKNLKILIIRNGKFSKGPNYFPESLRLLEWHGYPSNSLPSNFDPSNLVTCMLPNSHFTSFEFLGSSKKFENLSVLNFDWCKFLTHIPDMSDFVNLEEVSFKGCESLVAVHDSIGFMSKLKILNAECCIKLMSFPPLNLPTLERLQLSDCSSLEKFPEILGKMENIKGFELAGLPIKELPLSFQNLIGLEELSLSCKIVHLRSSIFTMPNLIYFIVTDCMEWKWVKSDDAEDNLGSTVPSKLEVFSAPSCNLDDNFFSAGFMQLAQVRSLILQNNNFKNLPECIKEFHNLKHLDVTHCKHLEEIRGFPPKLEYFSAPNCISLSSTSLDMLLNKELYEVRKATNFKFPGESFPEWFDLKSSGPSCSFWFRNKFPARVLSLLIIHMNKYENLSIFDPEVCINGKWQTGGGHYLLEETKFEFDQTYLCDLKMYGNFFKQPFEKEWNHVKVTYSTPTGKSWIKATGIHVFKEENNIMEDIRFDDPYIMEEEEKEEEKEEGEEEEEEKEEKAEEENSIMEDTMEEEGRRGKRRKLHHGRHSWFDDPYTNKKRKKGKEKRNKKKKKNNMQKKKKIASWKTLHLMLYHGRHHGRREKKKEENNIMKDTMEEEGRRGKRRKQQHGSHSV* 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0780 1175 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 14 910 - -
Vra1g0780 1175 SMART till_3 10 149 IPR000157 GO:0007165
Vra1g0780 1175 Gene3D Ribonuclease Inhibitor 531 724 IPR032675 -
Vra1g0780 1175 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 152 IPR035897 -
Vra1g0780 1175 Gene3D - 175 340 IPR027417 -
Vra1g0780 1175 MobiDBLite consensus disorder prediction 1143 1165 - -
Vra1g0780 1175 SUPERFAMILY "Winged helix" DNA-binding domain 415 525 IPR036390 -
Vra1g0780 1175 PRINTS Disease resistance protein signature 211 226 - -
Vra1g0780 1175 PRINTS Disease resistance protein signature 287 301 - -
Vra1g0780 1175 PRINTS Disease resistance protein signature 380 394 - -
Vra1g0780 1175 PRINTS Disease resistance protein signature 691 707 - -
Vra1g0780 1175 Coils Coil 1036 1078 - -
Vra1g0780 1175 Gene3D - 10 174 IPR035897 -
Vra1g0780 1175 Coils Coil 115 142 - -
Vra1g0780 1175 Gene3D - 345 429 IPR042197 -
Vra1g0780 1175 SUPERFAMILY L domain-like 506 890 - -
Vra1g0780 1175 MobiDBLite consensus disorder prediction 1031 1175 - -
Vra1g0780 1175 MobiDBLite consensus disorder prediction 1101 1142 - -
Vra1g0780 1175 Pfam TIR domain 11 173 IPR000157 GO:0007165
Vra1g0780 1175 ProSiteProfiles TIR domain profile. 9 176 IPR000157 GO:0007165
Vra1g0780 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 439 IPR027417 -
Vra1g0780 1175 Gene3D Ribonuclease Inhibitor 725 953 IPR032675 -
Vra1g0780 1175 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 910 IPR044974 GO:0006952
Vra1g0780 1175 MobiDBLite consensus disorder prediction 1038 1070 - -
Vra1g0780 1175 Pfam NB-ARC domain 197 411 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0780 Vra-Chr1 9175659 9179812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0780 11 774 WRKY Transcription Factor Family AT4G12020 30.877 1.79e-83 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0780 - - vra:106763192 2261.49