Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0777 ATGTTGGAACTATACGAAGCTAGAAAAGCTACTAACTTCAAGTTTCCAGGAGAAAGTTTTCCAGAGTGGTTTGATCTGAAGAGCAGTGGACCTTCATGTTCTTTCTGGTTTCGTAATAAGTTTCCTGCCAGAGTTCTTTCTCTTCTTATTATACATATGAATAAATATGATAACTTAAGTATTTTTCACCCTGAGGTGCGCATTAATGGGAAATGGCAAACAGGCGGAGGCCACTATTTGTTGGAGCAGACGAAATTTGAATTCGATCTAACATACCTCTCTGATCTAGAAGTGTATGGTAATTTGCTTGAACAACCTTTAGAAAAGGAATGGAATCACGTGAAGGTTACATATAGTACTCCGACAGGGAACTCATGGATTAAAGCAACAGGAATCCATGTATTCAAAGAGGAAAACAGCATCATGGAAGACATTCGGTTTGATGATCCTTATATCATGGAAGAAGAAGAAGGAAGAAGAGGAAAAAAAAGAAAACAGCATCATGGAAGACATTCCCGGTTTGATGATCCATATAGCAACAAGAAATTAGGCAAAGATCTCAACCCTTCTCAATCACAAAACCACTTGTTAAGGACCATAGTTCGTAGAAAGAAAGTTCTCTTGATTCTAGATGATGTTGACAACAGAAAGCAGTTACAAGCATTTGCTGGAAGATCTGATTGGTTTGGTCCTGGCAGCAGANTTATCATTACCACTCGGNACGAACAGCTGCTAAAATCTCATGAGATTNAAAGAACTTANGNGGTGNAGGAATTGAATGAGAATGATTCTCTTCAATTGCTTGTATGGAATGCTTTCAAAAGGGAAAAAGTTGATCCAAGGTACGAGGACGTGTTGAAACGTGTAGTAACTTATGCTTGTGGTCTTCCATTGGCTATAGAAGTAATAGGTTCCAACTTGGTTGGAAAAAGTGTAGAAGAATGGGAGTCGGCGATAGAACATTACAAAAGAATTCCAAATGGTGAAATTCTAGAGATACTTAAAGTAAGCTTTGATGGTTTGGGGGAAGAAGAAAAAAATGTCTTTCTTGACATCGCCTGTTGCTTCAAAGGAAGTAGTTTGAAAGAAGTTGAAAGTATACTTAGTGTTCTTTATGATAACAACATGAAACATCATATTGGGGTGTTGGTTGAAAAATCTCTCATAAAAGTTTGGGGTGAAATTGAAATGCACGATTTGATTGAGGACATGGGTAGACATATTGACCGGCAAAAGTCACCCGAAGAGCCAGGGAAGCGCAGGAGATTATGGTTAGGGAAAGATATCATTGATGTTTTAAAACACAACAAGGGAACTAGCAAAACTGAAATCATATGCCTGAATTTGTCTATATCTGAGAAAGAAGAAATGATAGAATGGAATGCCAACGCCTTCAGAAGTATGAAAAACCTTAAAATACTGATCATTAGAAATGGTAAATTTTCCAAAGGTCCCAATTATTTTCCGGAAAGTTTGAGAGTACTGGAATGGCATGGATATCCTTCAAATTGTTTACCATCAAATTTTGATTCTAGCAAACTTGTGACTTGCATGTTACCTCACAGTCATTTTACGTCATTTGGATTCCTTGGCTCATCAAAGAAGTTCGAGAATCTAACTGTCTTGAATTTTGATGGGTGCAAATTTTTAACACAGACACCCGATATGTCTGTTCTCGGAAATTTGGAGGAAGTTTCATTTAACTGGTGTGAGAATTTAGTTGCAGTTCACGACTCAATTGGTTTTATGAATAAACTTAAAATATTGCATGCGCAACATTGCATCAAGCTTATGAGTTTTCCACCTCTCAACTTGCCCACTCTTAAAAGCCTAGAACTTTCATTTTGTTCCAATCTTGAGAAATTTCCAGAAATACTAGGAAAGATGGAAAAGATAAGGGTACTTGAATTGGAGGGGCTTCCCATTAAAGAATTGCCACCATCCTTTCAAAATCTTATTGGTCTCGAAGAGTTATACTTGTTATGTAAAAATGTTCACTTATCAAGTATCATTGCCACGATGCCTAACTTGTATTATTTTGATTCTACTAATTCAAAGGGGTGGCAATGGGTAAAATCAGAAGATGCTGAAGATAACGTAGGCTCAATGGTTCCTTCAAAGGTAGATTTGTTTTCGGCCTTGTCTTGCATCCTGGATGATAACTTCTTTTCAACAGGTTTCAAAGGTAGATGCACGTACGATGTGTTCCTCAGCTTTAGAGGGAAAGACACGCGTTATGGTTTCATAGATAATCTCTACCAAGCTCTCTGTAACATGGGAATTCACCCTTTCACCGATAAGGAACTTTCAAAAGGAGAGGAAATAGTACCAGCACTTCAGAAAGCAATTGCAGAGTCTAGGATTGCCATCGTTGTGTTCTCTCACGACTATGCTTCTTCCTCTTTCTGCTTGGATGAACTTGCAACCATCCTTCACCACAAGAGTAAAGGGCTGTTGGTTATACCGGTGTTTTATAATGTGTATCCTTCTTATGTCAGACGTCAGAAAGGTAGCTATGAAGAAGCATTCGCTAACCATCAAGAGAGGTTCAAAGGGCAGGAGGAGAAGTTACATGAATGGAAAATGGCTCTGCGTCAAGTTGCTGACTTGTCTGGCTATTACTTCACAGATGGGGATGAATACCACCAGTACGAGTTTATTCAGAGAATTGTTGAACGGGTTTCCAGGGTGATTAGTGGTAGTGCTTTAGATGTTGCGAATAACCCAGTTGGCCTACTGTCACAGGTGGTGAAAGTCAAGAAACTTTTGGATGTTGGATCGGATGATGTTGTCCACATGATAGGGATCCTTTGA 2814 0.3859 MLELYEARKATNFKFPGESFPEWFDLKSSGPSCSFWFRNKFPARVLSLLIIHMNKYDNLSIFHPEVRINGKWQTGGGHYLLEQTKFEFDLTYLSDLEVYGNLLEQPLEKEWNHVKVTYSTPTGNSWIKATGIHVFKEENSIMEDIRFDDPYIMEEEEGRRGKKRKQHHGRHSRFDDPYSNKKLGKDLNPSQSQNHLLRTIVRRKKVLLILDDVDNRKQLQAFAGRSDWFGPGSRXIITTRXEQLLKSHEIXRTXXVXELNENDSLQLLVWNAFKREKVDPRYEDVLKRVVTYACGLPLAIEVIGSNLVGKSVEEWESAIEHYKRIPNGEILEILKVSFDGLGEEEKNVFLDIACCFKGSSLKEVESILSVLYDNNMKHHIGVLVEKSLIKVWGEIEMHDLIEDMGRHIDRQKSPEEPGKRRRLWLGKDIIDVLKHNKGTSKTEIICLNLSISEKEEMIEWNANAFRSMKNLKILIIRNGKFSKGPNYFPESLRVLEWHGYPSNCLPSNFDSSKLVTCMLPHSHFTSFGFLGSSKKFENLTVLNFDGCKFLTQTPDMSVLGNLEEVSFNWCENLVAVHDSIGFMNKLKILHAQHCIKLMSFPPLNLPTLKSLELSFCSNLEKFPEILGKMEKIRVLELEGLPIKELPPSFQNLIGLEELYLLCKNVHLSSIIATMPNLYYFDSTNSKGWQWVKSEDAEDNVGSMVPSKVDLFSALSCILDDNFFSTGFKGRCTYDVFLSFRGKDTRYGFIDNLYQALCNMGIHPFTDKELSKGEEIVPALQKAIAESRIAIVVFSHDYASSSFCLDELATILHHKSKGLLVIPVFYNVYPSYVRRQKGSYEEAFANHQERFKGQEEKLHEWKMALRQVADLSGYYFTDGDEYHQYEFIQRIVERVSRVISGSALDVANNPVGLLSQVVKVKKLLDVGSDDVVHMIGIL* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0777 937 Gene3D - 161 252 IPR027417 -
Vra1g0777 937 ProSiteProfiles TIR domain profile. 731 898 IPR000157 GO:0007165
Vra1g0777 937 SMART till_3 732 870 IPR000157 GO:0007165
Vra1g0777 937 SUPERFAMILY "Winged helix" DNA-binding domain 329 434 IPR036390 -
Vra1g0777 937 Pfam NB-ARC domain 193 324 IPR002182 GO:0043531
Vra1g0777 937 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 736 936 IPR044974 GO:0006952
Vra1g0777 937 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 192 728 IPR044974 GO:0006952
Vra1g0777 937 SUPERFAMILY L domain-like 459 685 - -
Vra1g0777 937 MobiDBLite consensus disorder prediction 156 190 - -
Vra1g0777 937 Gene3D - 258 342 IPR042197 -
Vra1g0777 937 PRINTS Disease resistance protein signature 200 214 - -
Vra1g0777 937 PRINTS Disease resistance protein signature 293 307 - -
Vra1g0777 937 PRINTS Disease resistance protein signature 603 619 - -
Vra1g0777 937 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 192 728 - -
Vra1g0777 937 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 736 936 - -
Vra1g0777 937 Gene3D Ribonuclease Inhibitor 394 709 IPR032675 -
Vra1g0777 937 SUPERFAMILY Toll/Interleukin receptor TIR domain 729 873 IPR035897 -
Vra1g0777 937 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 194 352 IPR027417 -
Vra1g0777 937 Pfam TIR domain 733 895 IPR000157 GO:0007165
Vra1g0777 937 Gene3D - 728 906 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0777 Vra-Chr1 9151875 9160533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0777 733 936 WRKY Transcription Factor Family AT4G12020 29.612 4.60e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0777 - - vra:106756940 1865.12