Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0776 ATGGCAACTCCAAGTTTCCGTAGATTCACATACGATGTGTTTCTCAGCTTTAGAGGGGAAGACACGCGTTATGGTTTCACTGGTAATCTCTACAAAACTCTCTGTGACAGGGGAGTTCACACTTTCATGGATGATGACAAACTTCAAACTGGAGAGGAAATCACACCAGCGCTTCAGAAAGCAATTGAAGAGTCTAGGATTGCCATCGTTGTGCTCTCTCACAACTATGCTTCTTCCTCCTTCTGCTTAGATGAACTTGCAACCATCCTTGACTGCAAGAGTAAATGGCTGTTGGTTATACCAGTGTTTTATAAGGTGGATCCTTCTTATGTCAGACATCAGAAGGGTAGCTATGAAGAAGCATTGGCTAAGCATCAAAAGAGGTTCAAAGGGCAGGAGGAGAAGTTACATAAATGGAAGATGGCTCTGCGTCAAGTTGCTGACTTGTCTGGCTATCACTTCGGACATGGGGATGAATACCAGTACAAGTTTATTGGGAGCATTGTTGACCGGGTTTCCAGGGTGATTAATCGTGCTCCTTTACATGTTGCGGATTACCCAGTTGGCCTACTGTCACATGTGCTGAAAGTCAAGAAACTTTTGGATGTTGGATCAGATGATGTTGTCCACATGATAGGGATCTGTGGAATGGGTGGATTAGGAAAAACAACAATTTCTCTAGCAGTTTATAATTTGATTGCTGATGATTTTGATAGTTCATGTTTTCTTCAAAACGTAAGAGAAGAATCTAATAAACATGGGTTAAAACACCTCCAGACCGTCCTTCTTTCAGAAATACTTGGAGAGAAGGACATCAGCTTAGCAAGTGTGCAGAGAGGAATTTCAGTGATACAACAAAGACTTCGTAGAAAGAAAGTTCTCTTGATTCTAGATGATGTTGACAACAGAAAGCAGTTACAAGCATTTGCTGGAAGATCTGATTGGTTTGGTCCTGGCAGCAGAGTTATCATTACCACTCGGAACGAACAGCTGCTAAAATCTCATGAGATTCAAAGAACTTACGAGGTGGAGGAATTGAATGAGAATGATTCTCTTCAATTGCTTGTATGGAATGCTTTCAAAAGGGNAAAATAA 1095 0.4128 MATPSFRRFTYDVFLSFRGEDTRYGFTGNLYKTLCDRGVHTFMDDDKLQTGEEITPALQKAIEESRIAIVVLSHNYASSSFCLDELATILDCKSKWLLVIPVFYKVDPSYVRHQKGSYEEALAKHQKRFKGQEEKLHKWKMALRQVADLSGYHFGHGDEYQYKFIGSIVDRVSRVINRAPLHVADYPVGLLSHVLKVKKLLDVGSDDVVHMIGICGMGGLGKTTISLAVYNLIADDFDSSCFLQNVREESNKHGLKHLQTVLLSEILGEKDISLASVQRGISVIQQRLRRKKVLLILDDVDNRKQLQAFAGRSDWFGPGSRVIITTRNEQLLKSHEIQRTYEVEELNENDSLQLLVWNAFKRXK* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0776 364 SMART till_3 10 149 IPR000157 GO:0007165
Vra1g0776 364 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 152 IPR035897 -
Vra1g0776 364 PRINTS Disease resistance protein signature 211 226 - -
Vra1g0776 364 PRINTS Disease resistance protein signature 287 301 - -
Vra1g0776 364 ProSiteProfiles TIR domain profile. 9 176 IPR000157 GO:0007165
Vra1g0776 364 Gene3D - 5 180 IPR035897 -
Vra1g0776 364 Pfam NB-ARC domain 193 362 IPR002182 GO:0043531
Vra1g0776 364 Pfam TIR domain 11 172 IPR000157 GO:0007165
Vra1g0776 364 Gene3D - 181 341 IPR027417 -
Vra1g0776 364 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 13 362 - -
Vra1g0776 364 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 362 IPR044974 GO:0006952
Vra1g0776 364 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 362 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0776 Vra-Chr1 9147391 9148619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0776 6 355 WRKY Transcription Factor Family AT4G12020 28.652 4.47e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0776 - - vra:111241413 705.671