Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0775 ATGCTTCTTGCTTTCCGTTGTTTTGAAGAAGAATGGGAATCTGCTATAAATAAAAATGACCCTGTTGGACTGGAGTCACGTTCAGATGCATTCTGCTACGATGTGTTCCTCAGCTTCATAGGCATAGACACACTCTATGGTTTTACAGGCCATCTCTACAAAGCTCTTAATGACAGTGGAATCCACACTTTCATTGATGATGAAAACCATCAGACAGGAGAGGAAATTACACCAACAACTGTGAAAGCAATTGAAGAGTCCAGGATTGCTATCACTGTGCTTTCTATAAACTATGCTTCTTCCACTTGGTGCTTAGATGAACTTGCAACCATTCTTGACTGCCTTAATAGAGAAAGACTGCTGGTCTTACCAGTCTTTTATTATGTGGATCCCACTCAGGTGCAATTGCAGAAAGGCAGGTTTGGAGAAGCCTTGACTAAGCATGAGGAGAGGCTCAAACATAACATGGAAAAGTTGTTGAAATGGAAGATGGCTCTTCATCAAGTAGCTAACTTGTTTTTCTTTCATATCGACCATGGGGCTGGTTATGAATATGAGTTTATTGGGAAGATTGTGGAGTGGGTCTCCAAGAAGATTAATCATGCTCATTATCCAATTGGACTAGAGTCACAAGTGCAAGAGGTAATGAAACTTTTGGATGTTGGATGTGATGGTGGTGCCCACATGATCGGGATTCATGGAACTGGTGGGGTTGGAAAATCGACACTGGCTCAAGAAGTTTATAATAATTTGATTTCTGAAAGGTTTGATGCTTCATGTTTTATTGAAAATGTGAGAGAAAAATCAAACAAGCACGGGTTACAATACCTCCAAAGCACCATTCTNGAGAATTTACTTGGAGAGAAGGACATCAAGTTAACTAGTGTGGAACAAGGAATTTTAATGATACAACGCAGGCTCCAGAAAAAGAAGGTTCTCTTGATTCTAGACGATGTTGACAGGCAGGAGCAATTGCAGGCAGTTGTTGGAAGAGCTGATTGGTTTGGTCGTGGCAGCAGAGTCATAATCACAACACGAGATGAACAGCTCCTTGCCTCCCATGATGTTCAAATAACTTATGAGGTGAAGAAATTAAATAACAAGGATGCTCTTGTATTGCTTAAATGGAAAGCTTTTAAAAATCATGACTTTGATCCAAGGTATGAGGAGCTCTTGAATCTTGCAGTAACTTTTTCTGATGGCATTCCATTAGCTTTGGAAGTAATAGGTTCCAACTTGTGTGGAAAAAGTGTAGAAGAATGGAAATCTGTCATTCATCAATTAGAAAAATGTCCAAGTAATCCGGTCGAAACAGTACTTAAAGCAAGCTTTGATTCTTTGGAGGAAAAAGAAAGGAGTGTTTTCCTTGACCTTGCTTGTTGCTACAAAGGATATGAATTGGCAGAGGTCGAAGATATACTTCAAGCTCATTATGGTCAGAACATGAAGTGTTACATTGACTCATTGGTTGAGAAATCTTTAGTTAAGCTTAGTCATGGTACAAAACCTTGTTATGACAGAGTTACATTGCATGACATGATTGAGGACATGGGTAAAGATATTGTCCGACAGGAATCATTGANAGGGCCAGGTGAGCGTACGAGATTATGGTTACTCGAAGATGTAAGACAACTTTTAGAAAACAACAGGGGAACTAGTAAAATTGAAATCATATGTCTGGATTTCTCCATATTTGATCAAGAAGAAAAAGTAGAATGGGATGGAAAGGCCTTCCAGAATATGCAAAACCTCAAAACACTTATTATTAGACATGGTAGTTTTTCCAAAGGTCCAGAATATCTCCCAGATAATTTGAGAGTGATAGAATGGTGGAGATATCCGTCAAATTGTTTACCATCTGATTTTCAGCCAAAGGAACTTGCCATATGCAAGTTACCCTGCAGTAGTATTTCGACAATTGAGATGAAAAACTTATTGAAGAAGTCGGTGAATCTAAGAGTTTTGAAATTTTCAAATACAAAGGTTTAA 1989 0.3866 MLLAFRCFEEEWESAINKNDPVGLESRSDAFCYDVFLSFIGIDTLYGFTGHLYKALNDSGIHTFIDDENHQTGEEITPTTVKAIEESRIAITVLSINYASSTWCLDELATILDCLNRERLLVLPVFYYVDPTQVQLQKGRFGEALTKHEERLKHNMEKLLKWKMALHQVANLFFFHIDHGAGYEYEFIGKIVEWVSKKINHAHYPIGLESQVQEVMKLLDVGCDGGAHMIGIHGTGGVGKSTLAQEVYNNLISERFDASCFIENVREKSNKHGLQYLQSTILENLLGEKDIKLTSVEQGILMIQRRLQKKKVLLILDDVDRQEQLQAVVGRADWFGRGSRVIITTRDEQLLASHDVQITYEVKKLNNKDALVLLKWKAFKNHDFDPRYEELLNLAVTFSDGIPLALEVIGSNLCGKSVEEWKSVIHQLEKCPSNPVETVLKASFDSLEEKERSVFLDLACCYKGYELAEVEDILQAHYGQNMKCYIDSLVEKSLVKLSHGTKPCYDRVTLHDMIEDMGKDIVRQESLXGPGERTRLWLLEDVRQLLENNRGTSKIEIICLDFSIFDQEEKVEWDGKAFQNMQNLKTLIIRHGSFSKGPEYLPDNLRVIEWWRYPSNCLPSDFQPKELAICKLPCSSISTIEMKNLLKKSVNLRVLKFSNTKV* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0775 662 SMART till_3 32 172 IPR000157 GO:0007165
Vra1g0775 662 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 35 645 IPR044974 GO:0006952
Vra1g0775 662 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 458 IPR027417 -
Vra1g0775 662 Gene3D - 31 196 IPR035897 -
Vra1g0775 662 Gene3D - 364 448 IPR042197 -
Vra1g0775 662 PRINTS Disease resistance protein signature 229 244 - -
Vra1g0775 662 PRINTS Disease resistance protein signature 306 320 - -
Vra1g0775 662 PRINTS Disease resistance protein signature 399 413 - -
Vra1g0775 662 PRINTS Disease resistance protein signature 579 595 - -
Vra1g0775 662 Pfam NB-ARC domain 209 447 IPR002182 GO:0043531
Vra1g0775 662 Gene3D - 197 359 IPR027417 -
Vra1g0775 662 ProSiteProfiles TIR domain profile. 31 199 IPR000157 GO:0007165
Vra1g0775 662 CDD AAA 206 351 - -
Vra1g0775 662 Pfam TIR domain 33 201 IPR000157 GO:0007165
Vra1g0775 662 SUPERFAMILY "Winged helix" DNA-binding domain 436 547 IPR036390 -
Vra1g0775 662 SUPERFAMILY Toll/Interleukin receptor TIR domain 27 172 IPR035897 -
Vra1g0775 662 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 35 645 - -
Vra1g0775 662 SUPERFAMILY L domain-like 573 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0775 Vra-Chr1 9132739 9135799 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0775 33 635 WRKY Transcription Factor Family AT4G12020 28.778 6.12e-57 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0775 - - vun:114181896 1129.39