Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0774 ATGGCTGTAACATCACCTTCCCAAGCAACCAGCTACGATGTGTTCCTCAATTTCAGAGGCTCAGACACACGCCAAGGTTTTACTGGCTATCTCTACAAAGCTCTATTTGACAGTGGAATCCACATTTTCATTGATGATGAGGGCATTCAGAGTGGACAGATAATACCAGAATCACTCAAGGAGGCAATAAAAAAGTCCAGGATTGCCATCACTGTGCTCTCACCAGACTATGCTTCTTCTTCCTTCTGTTTAGATGAACTTGTAACCATTCTTGAATGCTCCAAAAACAGTGGACTCTTGGTGTTGCCAGTCTTTTACAAGGTGCCTCCTGGTCATGTCAGACACCAGCGAGGAAGTTATGGAGAAGCATTTGCCATACATGAGCAAGGGCTCCACCCAAACATGGAGAAATGGAAGAAGGCACTGAAAGATGTAGCTAACATTTCTGGCTTTCCTCTCGATTATGGAAATGAATATGAGCACGAGCTTATTAAAAAGATTGTTGAGCGTGTCATCAGATTTCTCAATAATGATGAAAAAAGTTTGCATGTTCCAGATTTCCTAGTTGGAGTAGGGTCACAGGTTGAAGAAATAAGAAACCTTTTGGCTGTTCGAGATAATGGTGTCAATGTCAACATGATAGGGATCCACGGAATGGGCGGTGTGGGGAAATCAACACTTGCCTGCCTTGTTTATAATTTGATTACTGCTGGCTTTGAAGGTTCGTGTTTTCTTCAAAATGTAAGAGAAGAAGCAAACAAACATGGGTTAAAACACCTTCATAGCATCATTCTTTCACAGCTAGTTGGAATGAAGGAAATCAACGTGGCAAGTGAGCAACAAGGAATTTCAATAATAAAAAATAGGCTCAAACGAATGAAGGTTCTCTTAATTCTAGATGATGTAGAAAAGCACGAGCAATTACAGGGAATTGTTGGAAGTGCTGATTGGTTTGGTCCAGGCAGCATAGTCATCATCACCACTCGGGACAAACAACTTCTAGCATCTCATGGGGTTAAAAGAACACACGAGGTGAAGGAATTGAATAAGAGAGATGCTCTTAAATTGCTTAAATTTAAAGCTTTTAAAATGGAAGAAGTTGATCCAAGTTACAAGGAGGTATTGAATCAAGTAGTAACTTATGCTTCTGGTATTCCACTGGCTTTGGAAGTAATAGGTTCCAACTTGTTTGGAAAAAGTGTTCAAGAATGGGAATCTGCTATCAGACAATATAAAAGAATCCCTAATAATAAAATCCTAGAGATACTTAAAGTAAGCTTTGATTCATTGGGAGAAGAAGAGAAGAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGGTATAAATTGTCAGAAATTGAAGAGACACTTCGTGCTCTTTATGATAACTGCATGAAGTACCATATTGGGGTGCTAGTAGAAAAGTCTCTCATAAAGATTAGTCATGATGAAAGAGTCACATTTCATGACTTGATTGAGGACATGGGTAAAAGAATTGACCGTCAACAATCACCGAGAGAGCCAGGGAAGAGGAGGAGATTATGGTTACAGGAAGATATTATTCAAGTTTTGAAAGACAAATCGGGAACTAGTCAAATCAAAATTATCTGTCTGCATTTCTCAATATCCGACGTCCAAGTAGTAGAATGGGATGGAATCACAGATATGAAAAGTCTTAAAATACTTATTGTTAGAAATGGTATCTTTTCCCAAATTTGGAACTATCTTCCAGAAGGTTTGAAGGTACTAGAGTGGAGAGCATAG 1764 0.3906 MAVTSPSQATSYDVFLNFRGSDTRQGFTGYLYKALFDSGIHIFIDDEGIQSGQIIPESLKEAIKKSRIAITVLSPDYASSSFCLDELVTILECSKNSGLLVLPVFYKVPPGHVRHQRGSYGEAFAIHEQGLHPNMEKWKKALKDVANISGFPLDYGNEYEHELIKKIVERVIRFLNNDEKSLHVPDFLVGVGSQVEEIRNLLAVRDNGVNVNMIGIHGMGGVGKSTLACLVYNLITAGFEGSCFLQNVREEANKHGLKHLHSIILSQLVGMKEINVASEQQGISIIKNRLKRMKVLLILDDVEKHEQLQGIVGSADWFGPGSIVIITTRDKQLLASHGVKRTHEVKELNKRDALKLLKFKAFKMEEVDPSYKEVLNQVVTYASGIPLALEVIGSNLFGKSVQEWESAIRQYKRIPNNKILEILKVSFDSLGEEEKSVFLDIACCFKGYKLSEIEETLRALYDNCMKYHIGVLVEKSLIKISHDERVTFHDLIEDMGKRIDRQQSPREPGKRRRLWLQEDIIQVLKDKSGTSQIKIICLHFSISDVQVVEWDGITDMKSLKILIVRNGIFSQIWNYLPEGLKVLEWRA* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0774 587 SUPERFAMILY "Winged helix" DNA-binding domain 417 525 IPR036390 -
Vra1g0774 587 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 151 IPR035897 -
Vra1g0774 587 CDD ABC_ATPase 203 340 - -
Vra1g0774 587 PRINTS Disease resistance protein signature 213 228 - -
Vra1g0774 587 PRINTS Disease resistance protein signature 289 303 - -
Vra1g0774 587 PRINTS Disease resistance protein signature 382 396 - -
Vra1g0774 587 Gene3D - 174 342 IPR027417 -
Vra1g0774 587 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 441 IPR027417 -
Vra1g0774 587 Pfam TIR domain 12 177 IPR000157 GO:0007165
Vra1g0774 587 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 586 IPR044974 GO:0006952
Vra1g0774 587 SMART till_3 11 148 IPR000157 GO:0007165
Vra1g0774 587 ProSiteProfiles TIR domain profile. 10 175 IPR000157 GO:0007165
Vra1g0774 587 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 14 586 - -
Vra1g0774 587 SMART AAA_5 210 337 IPR003593 -
Vra1g0774 587 Pfam NB-ARC domain 194 413 IPR002182 GO:0043531
Vra1g0774 587 Gene3D - 5 173 IPR035897 -
Vra1g0774 587 Gene3D - 347 431 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0774 Vra-Chr1 9084999 9087534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0774 7 585 WRKY Transcription Factor Family AT4G12020 27.731 1.02e-55 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0774 - - gmx:547638 709.523