Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0773 ATGGAAAAGTTGGTTAAATGGAAGATTGCTCTGTATCAAGTTGCTAAGTTGTTTTCCTTTCATATCTACCATGGGGATGGTTATGAGTATGAGCTTATTGGGAAGATTGTGGAGTGGGTCTCCAAGAAGATTAATCGTGCTCATTACCCAATTGGACTAGAGTCACAAGTGCAAGAGGTAATGAAACTTTTGGATGTTGGATGTGATGGTGGTCCCCACATGATCGGGATTCATGGAACTGGTGGGGTTGGAAAATCGACACTGGCTCAAGAAGTTTATAATAATTTGATTTCTGAAAGGTTTGATGCTTCATGTTTTATTGAAAATGTGAGAGAAAAATCAAACAAGCACGGGTTACAATACCTCCAAAGCACCATTCTAGAGAATTTACTTGGAGAGAAGGACATCAAGTTAACTAGTGTGGAACAAGGAATTTTAATGATACAACGCAGGCTCCAGAAAAAGAAGGTTCTCTTGATTCTAGACGATGTTGACAGGCAGGAGCAATTGCAGGCAGTTGTTGGAAGAGCTGATTGGTTTGGTCGTGGCAGCAGAGTCATAATCACAACACGAGATGAACAGCTCCTTGCCTCCCATGATGTTCAAATAACTTATGAGGTGAAGAAATTAAATAACAAGGATGCTCTTGTATTGCTTAAATGGAAAGCTTTTAAAAAGCATTACTTTGATCCAAGGTATGAGNAGCTCTTGAATCNTGCNGTAACTTTTTCTGNTGGCATTCCATTAGCTTTGGAAGTAATAGGTTCCAACTTGTGTGGAAAAAGTGTAGAAGAATGGAAATCTGTCATTCATCAATTAGAAAAATGTCCCAATAATCCGGTCGAAACAGTACTTAAAGCAAGCTTTGATTCTTTGGAGGAAAAAGAAAGGAGTGTTTTCCTTGACCTTGCTTGTTGCTACAAAGGATATGAATTGGCAGAGGTCGAAGATATACTTCAAGCTCATTATGGTCAGAACATGAAATGTTACATTGACTCATTGGTTGACAAATCCTTAGTTAAGCTTAGTCATGGTACAAAACCTTGTTATGACAGAGTTACATTGCATGACTTGATTGAGGACATGGGTAAAGATATTGTCCGACAGGAATCATTGACAGGGCCAGGTGAGCGTACGAGATTATGGTTACTCGAAGATGTAAGACAACTTTTAGAAAACAGCAGGGGAAATAGTAAAATTGAAATCATATGTCTGGATTTCTCCATATTTGATCAAGAAGAAAGAGTAGAATGGGATGGAAAGGCCTTCCAGAATATGCAAAACCTCAAAACACTTATTATTAAACATGGTAGTTTTTCCAAAGGTCCAGAATATCTCCCAGATAATTTGAGAGTGCTTGAATGGTGGAGATATCCGTCAAATTGTTTACCATCTGATTTTCATCCAAAGGAACTTGCCATATGCAAGTTACCCTGCAGTAGTATTTCGACAATTGAGTTGACAAACATATTGAAGGCAAGTTTAATGAGTGCATTATTTGTAAATTGA 1509 0.3804 MEKLVKWKIALYQVAKLFSFHIYHGDGYEYELIGKIVEWVSKKINRAHYPIGLESQVQEVMKLLDVGCDGGPHMIGIHGTGGVGKSTLAQEVYNNLISERFDASCFIENVREKSNKHGLQYLQSTILENLLGEKDIKLTSVEQGILMIQRRLQKKKVLLILDDVDRQEQLQAVVGRADWFGRGSRVIITTRDEQLLASHDVQITYEVKKLNNKDALVLLKWKAFKKHYFDPRYEXLLNXAVTFSXGIPLALEVIGSNLCGKSVEEWKSVIHQLEKCPNNPVETVLKASFDSLEEKERSVFLDLACCYKGYELAEVEDILQAHYGQNMKCYIDSLVDKSLVKLSHGTKPCYDRVTLHDLIEDMGKDIVRQESLTGPGERTRLWLLEDVRQLLENSRGNSKIEIICLDFSIFDQEERVEWDGKAFQNMQNLKTLIIKHGSFSKGPEYLPDNLRVLEWWRYPSNCLPSDFHPKELAICKLPCSSISTIELTNILKASLMSALFVN* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0773 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 303 IPR027417 -
Vra1g0773 502 Gene3D - 209 288 IPR042197 -
Vra1g0773 502 SUPERFAMILY "Winged helix" DNA-binding domain 281 392 IPR036390 -
Vra1g0773 502 Gene3D - 289 365 IPR036388 -
Vra1g0773 502 CDD AAA 51 196 - -
Vra1g0773 502 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 7 494 - -
Vra1g0773 502 SMART AAA_5 71 216 IPR003593 -
Vra1g0773 502 Pfam NB-ARC domain 54 292 IPR002182 GO:0043531
Vra1g0773 502 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 494 IPR044974 GO:0006952
Vra1g0773 502 Gene3D - 36 204 IPR027417 -
Vra1g0773 502 PRINTS Disease resistance protein signature 74 89 - -
Vra1g0773 502 PRINTS Disease resistance protein signature 151 165 - -
Vra1g0773 502 PRINTS Disease resistance protein signature 244 258 - -
Vra1g0773 502 PRINTS Disease resistance protein signature 424 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0773 Vra-Chr1 9082223 9084464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0773 6 480 WRKY Transcription Factor Family AT4G12020 30.584 5.16e-55 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0773 - - vra:106756909 1008.82