Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0772 ATGGCTGCATCATTCACCTATGATGTGTTTCTCAGCTTCAGAGGAGCAGACACACGCTATGGTTTTGTTGGCAATCTCTACAAAGCTCTCTGTGAGAGGGGAATTCACACTTTCACCGATCAGATGCTTCTGAAGAGAAAGGAATCAATAGCAACGTTTCTGAGTGCAATTGAAGAGTCTAGGATTGCCATTGTTGTGCTCTCTCACAACTATGCTTCTTCCTACTTCTGTTTGGATGAACTTGCAAACATCCTTCACTGCCAGACCAAAGGATTGTTGGTTATACCGGTCTTCTATAAGGTCCACCCTTCTGATGTCAGACATCAGAGAGGGAGTTATGGAGAAGCATTGACTATGCATCAGAAAAGGTTCAAAGATATGGAGAAGGTGCAGAAATGGAAGATGGCTCTGCATCAAGTAGCTAACTTGTCTGGCTATCATTTCGAAGACGGAGTTGGATATGAATACAAGTTTATTAAGAGAATTGTTGACGATGTCTATCACAAGATTACTCGTGATTCTTTGAAACATGTTTCGGATTACCCAATTGGAGTACAGTCACAAGTGCTAGAAGTGAGGAAGCTTTTGGATTTTGGATTTGAGGATGGTGTTCACATGATAGGAATCCACGGGATGGGTGGGGTAGGAAAATCAACACTTGCTCGAGCTGTCTACAATCATTTAATTGGTGAGAATTTTGATGGATTGTGTTTTCTTGAAAACGTGAGAGAAAAAACAAACAAACATGGGTTAAAACACCTGCAAAGCATCCTTCTATCACAGATATTAGGAGAGAAGGACATCAACTTTACAAGTATGCAGCAAGGAATTTCTACGATAAAGTATAGGCTCAAGATGAAGAAGGTTCTCCTGGTTCTGGATGATGTTAACAAGCCCGACCAATTACAAGCAGTTGCTGGAGGACGTGACTGGTTTGGTCCTGGCAGCAGAATCATCATTACAACTCGGGACAAACAATTGTTGGCTAATCATAGAGTTACTATGATGTATGAGGTGAAGGGATGGAATGACAATGATGCTCTTCAGCTGCTTAAATGGAAAGCTTTCAGAAATGAAAAGGCTGATCCAGATTTTGAGTTAGCCTTGAATCGTCTTGTAAATTATGCTTCTGGCCTTCCACTGGCTTTAGAAGTAATAGGAGGCAGCTTGGTTGGAAAAAGTATAGAAGGATGGAAGACCGTTATCAAACAATATGAAAGCATTCGCAAGAGGGAAATCCTAAATATACTTAAAGTAAGCTTTGATGCTTTGGAGGAAGAAGAGAAGATTCCTTTTCTTGATATCGCTTGTTTCTTAAAAGAACATGCACTGAGAGAGGTTGAAGATATACTTCATGCTTATTATGGTCGTAGCATGAAACAACACATTGGCATGCTGGTTGAAAGATCTCTGTTGAAGTTTGATTATTTTGATAATAGACTTACAATGCATGACTTGGTAAGGGACATGCCTAGGTTTGTCTGGAAGGAATTATGGAAAGAGCTGGGGAAGAACAGTAGATTATGGTTACATAAAGATATGATTAATGTTTCGAATAACAATGTGAGTGAGAAACTTTGA 1581 0.3991 MAASFTYDVFLSFRGADTRYGFVGNLYKALCERGIHTFTDQMLLKRKESIATFLSAIEESRIAIVVLSHNYASSYFCLDELANILHCQTKGLLVIPVFYKVHPSDVRHQRGSYGEALTMHQKRFKDMEKVQKWKMALHQVANLSGYHFEDGVGYEYKFIKRIVDDVYHKITRDSLKHVSDYPIGVQSQVLEVRKLLDFGFEDGVHMIGIHGMGGVGKSTLARAVYNHLIGENFDGLCFLENVREKTNKHGLKHLQSILLSQILGEKDINFTSMQQGISTIKYRLKMKKVLLVLDDVNKPDQLQAVAGGRDWFGPGSRIIITTRDKQLLANHRVTMMYEVKGWNDNDALQLLKWKAFRNEKADPDFELALNRLVNYASGLPLALEVIGGSLVGKSIEGWKTVIKQYESIRKREILNILKVSFDALEEEEKIPFLDIACFLKEHALREVEDILHAYYGRSMKQHIGMLVERSLLKFDYFDNRLTMHDLVRDMPRFVWKELWKELGKNSRLWLHKDMINVSNNNVSEKL* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0772 526 Pfam NB-ARC domain 192 411 IPR002182 GO:0043531
Vra1g0772 526 Gene3D - 342 425 IPR042197 -
Vra1g0772 526 Pfam TIR domain 7 170 IPR000157 GO:0007165
Vra1g0772 526 ProSiteProfiles TIR domain profile. 5 170 IPR000157 GO:0007165
Vra1g0772 526 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 10 518 - -
Vra1g0772 526 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 146 IPR035897 -
Vra1g0772 526 PRINTS Disease resistance protein signature 206 221 - -
Vra1g0772 526 PRINTS Disease resistance protein signature 283 297 - -
Vra1g0772 526 PRINTS Disease resistance protein signature 376 390 - -
Vra1g0772 526 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 518 IPR044974 GO:0006952
Vra1g0772 526 Gene3D - 2 168 IPR035897 -
Vra1g0772 526 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 435 IPR027417 -
Vra1g0772 526 SMART till_3 6 143 IPR000157 GO:0007165
Vra1g0772 526 SUPERFAMILY "Winged helix" DNA-binding domain 412 515 IPR036390 -
Vra1g0772 526 Gene3D - 169 336 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0772 Vra-Chr1 9078895 9081163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0772 183 509 WRKY Transcription Factor Family AT5G45050 34.848 4.89e-49 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0772 - - vun:114181896 789.26