Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0757 ATGGGTAGAAAGAAAAGAACTGAAGGAGGACCTAGTGGGGGTGAAAGCTCTGAGCCTCAACGCCCTGCTGAAAGAAGTGCACCGCCCCAACAACAGGCTGCTGGCCCTGGTGGGACTGGACCCCAAGGAGGAGGTAGAGCCTGGGGTCCCCAAGGAGGGCGAGGAGGTTATGGTGGAGGCCGTGGTCGTGGGATGCCTCAGCAACAATATGGCATCCCCCAACAGCAATATGGCGCCCCAGCTGATTATCAAGGTAGGGGACGAGGAGGATCTTCTCAGCAAGGAGGCCGTGGGGGATATGGTGGTGGCCGCAGTGGTGGTGTTGGCGGCGGTGGCCGAGGAATAGGTCCTTCATATGGTGGCTCTTCTAGGCCACCAGTACCCGAGCTGCACCAAGCAACCTCAGTTCAATCATACCAAACTGGGGTGAGTCCTCAGCCTACATCATCTGAGGCGAGTTCTTCCCTGCCGCCTGAACCGGTGGATTTGGAGCCATCGGTGGGGCAGATGGTGATTGCTGAAGCTACTCCTACCCCTCCTCCTCAAAGTAAATCATCCATGAGGTTTCCCCTCCGACCTGGGAAGGGTAGCTATGGCATAAAATGCATTGTTAAGGCTAATCACTTCTTTGCGGAGTTACCTAACAAAGATCTTCATCAATATGACGTAACCATTACTCCAGAAGTGACGTCTAGAGGCGTGAACCGTGCTGTTATGGAGCAATTGGTCAGGCTTTATCGGGAATCTCACTTGGGCAAGAGGCTTCCTGCCTATGATGGACGCAAAAGCCTCTATACTGCTGGGCCCTTGCCATTTATATCAAAGGAGTTTAGAATTACTCTTATTGATGATGATGAAGGAGCAGCAGGAGGACAGAGGAGGGACCGAGAGTTCAAGGTGGTGATTAAGTTGGCTGCACGGGCAGACCTTCACCATTTAGGGCTGTTTTTACAAGGAAGGCAGACTGATGCGCCACAAGAGGCTTTGCAGGTCCTTGACATTGTACTGCGTGAACTCCCTACTACAAGGTATTGTCCTGTAGGAAGATCATTTTATTCACCCGATCTTGGAAGAAGACAGCCTTTAGGTGAGGGATTGGAGAGCTGGCGTGGTTTCTACCAAAGTATTCGTCCAACTCAGATGGGGTTGTCACTGAATATTGATATGTCCTCCACTGCTTTTATTGAGCCACTGCCAGTTATAGATTTTGTCACCCAATTGCTGAATAGAGATGTTTCTGCTCGACCTCTGTCTGATGCTGATCGAGTGAAGATCAAGAAAGCTCTCCGAGGGATCAAAGTTGAAGTAACACACAGAGGAAATATGAGAAGAAAATACCGAATTTCTGGCCTGACTTCTCAGGCAACAAGAGAGTTGACGTTCCCTGTAGATGAAAGAGGAACTATGAAATCTGTTGTGGAGTACTTCTATGAGACATATGGGTTTGTCATTCAGCATACTCAGTGGCCTTGTCTGCAAGTTGGGAATACACAAAGGCCAAACTATTTGCCAATGGAGGTATGCAAGATTGTGGAAGGGCAGAGATATTCTAAGAGGTTGAATGAGAGACAGATCACTGCTCTTCTGAAAGTTACATGCCAGCGTCCCGTTGAGAGGGAGCGTGATATCATGCAGACTGTATATCACAATGCATACCATGAAGATCCTTATGCCCAAGAGTTTGGAATCAAAATTAGCGAGAAGCTTGCTCAAGTTGAAGCACGCATCCTACCTGCACCCTGGCTCAAATATCATGATACAGGTAGAGAGAAGGATTGTCTTCCTCAAGTTGGGCAGTGGAATATGATGAACAAGAAAATGGTTAATGGGGGTACTGTTAACCATTGGTTCTGCATCAATTTTTCAAGGAGTGTTCAGGATAGTGTTGCCCGTGGCTTTTGCTATGAACTTGCTCAGATGTGCTATATATCTGGCATGGCATTTAATCCGGAGCCAGTTGTCCCACCAGTCAGTGCTCGCCCTGATCAGGTGGAGAAAGTTCTAAAAACCCGTTATCATGATGCAAAGAATAAGCTTCAGGGAAGGGAGCTTGATTTGCTCATTGTTATTTTACCTGACAATAATGGATCTCTTTATGGTGATCTCAAACGTATATGTGAGACAGATCTTGGACTAGTTTCACAATGTTGTTTGACTAAGCACGTCTTTAAAATGAGCAAGCAGTATCTCGCAAATGTGGCATTGAAAATTAATGTTAAAGTGGGAGGGAGAAACACTGTACTTGTTGATGCACTTTCACGGCGCATCCCCTTGGTTGGAGACAGACCCACTATTATTTTTGGAGCTGATGTGACTCATCCACATCCTGGAGAGGATTCAAGTCCATCAATTGCAGCTGTTGTGGCTTCCCAAGATTATCCGGAAATTACAAAGTATGCTGGTTTAGTCTGCGCCCAAGCTCATAGACAGGAACTCATTCAGGACCTTTTCAAACAATGGCAAGATCCAGTCAGAGGAACAGTGACTGGTGGAATGATCAAAGAACTTCTTATATCTTTTAGGAGGGCTACGGGACAGAAGCCACAACGCATTATATTTTACAGGGATGGTGTCAGTGAAGGTCAATTTTACCAAGTTCTACTGTTTGAACTTGATGCTATTCGAAAGGCATGTGCATCCCTTGAACCCAACTATCAACCTCCTGTTACATTTGTTGTGGTTCAAAAGCGTCATCACACGAGGCTCTTTGCTAGCAACCATCATGACAAGAGTTCTGTTGACAGGAGTGGCAACATATTGCCTGGCACAGTTGTCGATTCCAAAATCTGTCATCCAACAGAATTTGACTTTTATCTTTGTAGCCATGCTGGAATACAGGGTACCAGCCGTCCTGCTCACTATCACGTGTTGTGGGATGAAAACAATTTTACTGCAGATGCTTTGCAAACTCTTACTAACAACCTTTGCTACACATATGCTAGATGCACACGATCTGTTTCAATTGTGCCTCCTGCATATTATGCCCACTTGGCTGCTTTCCGTGCAAGATTTTACATGGAACCAGAGACGTCCGATAGTGGGTCCATGACGAGTGGTGCAGTTGCTGGCCGTGGAATGGGTGGCGGTATTGGTCGAAGCACCCGAGCACCTGGAGCTAATGCTGCTGTGAGACCACTACCTGCTCTGAAGGAGAATGTGAAGAGGGTTATGTTTTATTGTTAA 3183 0.4687 MGRKKRTEGGPSGGESSEPQRPAERSAPPQQQAAGPGGTGPQGGGRAWGPQGGRGGYGGGRGRGMPQQQYGIPQQQYGAPADYQGRGRGGSSQQGGRGGYGGGRSGGVGGGGRGIGPSYGGSSRPPVPELHQATSVQSYQTGVSPQPTSSEASSSLPPEPVDLEPSVGQMVIAEATPTPPPQSKSSMRFPLRPGKGSYGIKCIVKANHFFAELPNKDLHQYDVTITPEVTSRGVNRAVMEQLVRLYRESHLGKRLPAYDGRKSLYTAGPLPFISKEFRITLIDDDEGAAGGQRRDREFKVVIKLAARADLHHLGLFLQGRQTDAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSARPLSDADRVKIKKALRGIKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPVERERDIMQTVYHNAYHEDPYAQEFGIKISEKLAQVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNHWFCINFSRSVQDSVARGFCYELAQMCYISGMAFNPEPVVPPVSARPDQVEKVLKTRYHDAKNKLQGRELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVGDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDYPEITKYAGLVCAQAHRQELIQDLFKQWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDKSSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAVAGRGMGGGIGRSTRAPGANAAVRPLPALKENVKRVMFYC* 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0757 1060 Pfam Mid domain of argonaute 595 670 IPR032473 -
Vra1g0757 1060 Gene3D paz domain 391 516 - -
Vra1g0757 1060 MobiDBLite consensus disorder prediction 1 163 - -
Vra1g0757 1060 MobiDBLite consensus disorder prediction 128 156 - -
Vra1g0757 1060 Pfam Argonaute linker 1 domain 346 396 IPR014811 -
Vra1g0757 1060 Gene3D - 755 1060 IPR036397 GO:0003676
Vra1g0757 1060 CDD PAZ_argonaute_like 397 511 - -
Vra1g0757 1060 SMART DUF1785_2 345 397 IPR014811 -
Vra1g0757 1060 ProSiteProfiles Piwi domain profile. 686 1007 IPR003165 GO:0003676
Vra1g0757 1060 ProSiteProfiles PAZ domain profile. 398 512 IPR003100 GO:0005515
Vra1g0757 1060 Pfam Glycine-rich region of argonaut 78 170 IPR024357 -
Vra1g0757 1060 Pfam PAZ domain 402 527 IPR003100 GO:0005515
Vra1g0757 1060 Pfam Piwi domain 687 1006 IPR003165 GO:0003676
Vra1g0757 1060 PANTHER PROTEIN ARGONAUTE 1A 93 1059 - -
Vra1g0757 1060 CDD Piwi_ago-like 556 1006 IPR045246 -
Vra1g0757 1060 SMART PAZ_2_a_3 402 534 IPR003100 GO:0005515
Vra1g0757 1060 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 93 1059 - -
Vra1g0757 1060 Pfam Argonaute linker 2 domain 538 584 IPR032472 -
Vra1g0757 1060 MobiDBLite consensus disorder prediction 23 37 - -
Vra1g0757 1060 SUPERFAMILY PAZ domain 203 552 IPR036085 GO:0005515
Vra1g0757 1060 SMART Piwi_a_2 686 1007 IPR003165 GO:0003676
Vra1g0757 1060 Pfam N-terminal domain of argonaute 202 336 IPR032474 -
Vra1g0757 1060 Gene3D - 576 749 - -
Vra1g0757 1060 SUPERFAMILY Ribonuclease H-like 672 1007 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0757 Vra-Chr1 8940190 8947011 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0757 82 1060 Eukaryotic Initiation Factors Gene Family AT1G48410 82.049 0.0 1625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0757 K11593 - gmx:100780375 1850.87