Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0756 ATGTCACCGGTTGGATTACCACCTGGCTTTAGGTTCCATCCAACCGATGAAGAGCTTGTCAACTACTATCTCAAGAGGAAGATCAATGGCCAAGAAATTGAACTTGATATCATTCCTGAAGTTGATCTCTACAAATGTGAACCTTGGGAATTAGCAGGGTACTGGAAGTCCACTGGAAAAGATAGGAAAGTTTCCTGCCAAAGCAGACCCATTGGCATGAAGAAGACTTTGGTGTACTATAGAGGCAGAGCTCCTCAAGGAATCAGAACTGATTGGGTAATGCATGAGTATCGCCTTGATGACAAGGAGTGTGAAGACACCACTGGATTACAGGATACTTATGCATTGTGCCGGGTTTTCAAGAAAAATGGAATCTGTTCTGAGATTGAAGAGCAAGGACAATGTAGTATATCACTCATTGAGAGCTGCCAAACCATGATTAATGAGTGTGAAACCATGTCTCCTGACATACCAGGCGCATCATCATCATGCTTGGAAGAGGAAGACAAAGATGATTCATGGATGCAGTTCATTACAGAAGATGCATGGTATTCTTCTAATGCAGCTATGGTTGGTGGTGAAGAACTCTCACATGTTACATTTACAAACTAA 612 0.4216 MSPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAGYWKSTGKDRKVSCQSRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDTTGLQDTYALCRVFKKNGICSEIEEQGQCSISLIESCQTMINECETMSPDIPGASSSCLEEEDKDDSWMQFITEDAWYSSNAAMVGGEELSHVTFTN* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0756 203 Gene3D NAC domain 53 125 IPR036093 GO:0003677|GO:0006355
Vra1g0756 203 Gene3D NAC domain 15 52 IPR036093 GO:0003677|GO:0006355
Vra1g0756 203 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 52 - -
Vra1g0756 203 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 52 203 - -
Vra1g0756 203 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 52 203 - -
Vra1g0756 203 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 52 - -
Vra1g0756 203 ProSiteProfiles NAC domain profile. 1 122 IPR003441 GO:0003677|GO:0006355
Vra1g0756 203 SUPERFAMILY NAC domain 4 123 IPR036093 GO:0003677|GO:0006355
Vra1g0756 203 Pfam No apical meristem (NAM) protein 53 99 IPR003441 GO:0003677|GO:0006355
Vra1g0756 203 Pfam No apical meristem (NAM) protein 7 52 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0756 Vra-Chr1 8903825 8907793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0756 1 192 NAC Transcription Factor Family AT3G17730 62.656 1.06e-98 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra1g0756 NAM 9.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0756 - - gmx:100784495 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0756 1 8903825 8907793 Vra1g0756 1 8903825 8907793 ECH